Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
BEST3Q8N1M1 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
BEST3Q8N1M1 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
BEST3Q8N1M1 BX664725.1-201ENST00000438252 379 ntBASIC21.86■■□□□ 1.09
BEST3Q8N1M1 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.86■■□□□ 1.09
BEST3Q8N1M1 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.86■■□□□ 1.09
BEST3Q8N1M1 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.86■■□□□ 1.09
BEST3Q8N1M1 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
BEST3Q8N1M1 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.86■■□□□ 1.09
BEST3Q8N1M1 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
BEST3Q8N1M1 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
BEST3Q8N1M1 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
BEST3Q8N1M1 KRT125P-201ENST00000546827 989 ntBASIC21.85■■□□□ 1.09
BEST3Q8N1M1 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
BEST3Q8N1M1 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
BEST3Q8N1M1 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.85■■□□□ 1.09
BEST3Q8N1M1 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
BEST3Q8N1M1 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BEST3Q8N1M1 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.84■■□□□ 1.09
BEST3Q8N1M1 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BEST3Q8N1M1 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
BEST3Q8N1M1 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BEST3Q8N1M1 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
BEST3Q8N1M1 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BEST3Q8N1M1 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
BEST3Q8N1M1 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.84■■□□□ 1.09
BEST3Q8N1M1 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
BEST3Q8N1M1 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.83■■□□□ 1.09
BEST3Q8N1M1 ERN1-208ENST00000606895 2068 ntBASIC21.83■■□□□ 1.09
BEST3Q8N1M1 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
BEST3Q8N1M1 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
BEST3Q8N1M1 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
BEST3Q8N1M1 AC131212.1-201ENST00000613771 668 ntBASIC21.83■■□□□ 1.09
BEST3Q8N1M1 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
BEST3Q8N1M1 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
BEST3Q8N1M1 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
BEST3Q8N1M1 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
BEST3Q8N1M1 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.82■■□□□ 1.08
BEST3Q8N1M1 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.82■■□□□ 1.08
BEST3Q8N1M1 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
BEST3Q8N1M1 AL356441.2-201ENST00000443009 864 ntBASIC21.82■■□□□ 1.08
BEST3Q8N1M1 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
BEST3Q8N1M1 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.81■■□□□ 1.08
BEST3Q8N1M1 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
BEST3Q8N1M1 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.81■■□□□ 1.08
BEST3Q8N1M1 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
BEST3Q8N1M1 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
BEST3Q8N1M1 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
BEST3Q8N1M1 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.81■■□□□ 1.08
BEST3Q8N1M1 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.81■■□□□ 1.08
BEST3Q8N1M1 MIR4787-201ENST00000607364 84 ntBASIC21.81■■□□□ 1.08
BEST3Q8N1M1 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.81■■□□□ 1.08
BEST3Q8N1M1 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.81■■□□□ 1.08
BEST3Q8N1M1 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
BEST3Q8N1M1 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
BEST3Q8N1M1 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
BEST3Q8N1M1 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
BEST3Q8N1M1 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.79■■□□□ 1.08
BEST3Q8N1M1 MIR4281-201ENST00000580852 62 ntBASIC21.79■■□□□ 1.08
BEST3Q8N1M1 AC137630.3-201ENST00000607245 391 ntBASIC21.79■■□□□ 1.08
BEST3Q8N1M1 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.79■■□□□ 1.08
BEST3Q8N1M1 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
BEST3Q8N1M1 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
BEST3Q8N1M1 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
BEST3Q8N1M1 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BEST3Q8N1M1 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
BEST3Q8N1M1 AC096887.2-201ENST00000623443 1957 ntBASIC21.78■■□□□ 1.08
BEST3Q8N1M1 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BEST3Q8N1M1 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
BEST3Q8N1M1 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.78■■□□□ 1.08
BEST3Q8N1M1 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BEST3Q8N1M1 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BEST3Q8N1M1 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BEST3Q8N1M1 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BEST3Q8N1M1 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
BEST3Q8N1M1 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.78■■□□□ 1.08
BEST3Q8N1M1 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BEST3Q8N1M1 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
BEST3Q8N1M1 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
BEST3Q8N1M1 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
BEST3Q8N1M1 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.77■■□□□ 1.08
BEST3Q8N1M1 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
BEST3Q8N1M1 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.77■■□□□ 1.08
BEST3Q8N1M1 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.77■■□□□ 1.08
BEST3Q8N1M1 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
BEST3Q8N1M1 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.77■■□□□ 1.08
BEST3Q8N1M1 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
BEST3Q8N1M1 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
BEST3Q8N1M1 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
BEST3Q8N1M1 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
BEST3Q8N1M1 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
BEST3Q8N1M1 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
BEST3Q8N1M1 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
BEST3Q8N1M1 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
BEST3Q8N1M1 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
BEST3Q8N1M1 AC011551.1-201ENST00000614101 683 ntBASIC21.76■■□□□ 1.07
BEST3Q8N1M1 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.76■■□□□ 1.07
BEST3Q8N1M1 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
BEST3Q8N1M1 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
BEST3Q8N1M1 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 249.2 ms