Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.269e-7■■□□□ 11.4
LIN28BQ6ZN17 NADK-217ENST00000498806 269 ntTSL 313.38□□□□□ -0.279e-7■■□□□ 11.4
LIN28BQ6ZN17 G3BP1-203ENST00000507878 577 ntTSL 413.37□□□□□ -0.273e-7■■□□□ 11.4
LIN28BQ6ZN17 DIAPH1-205ENST00000448451 2102 ntTSL 212.94□□□□□ -0.348e-9■■□□□ 11.4
LIN28BQ6ZN17 DIAPH1-208ENST00000476339 2606 ntTSL 212.17□□□□□ -0.468e-9■■□□□ 11.4
LIN28BQ6ZN17 KANSL1-229ENST00000639531 2731 ntTSL 512.06□□□□□ -0.488e-9■■□□□ 11.4
LIN28BQ6ZN17 KANSL1-211ENST00000575318 4935 ntTSL 5 BASIC11.56□□□□□ -0.568e-9■■□□□ 11.4
LIN28BQ6ZN17 NADK-204ENST00000378625 3653 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.69e-7■■□□□ 11.4
LIN28BQ6ZN17 KANSL1-201ENST00000262419 5309 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.628e-9■■□□□ 11.4
LIN28BQ6ZN17 KANSL1-208ENST00000574590 5147 ntAPPRIS ALT1 TSL 2 BASIC10.95□□□□□ -0.668e-9■■□□□ 11.4
LIN28BQ6ZN17 PSMD5-207ENST00000496688 384 ntTSL 39.93□□□□□ -0.828e-9■■□□□ 11.4
LIN28BQ6ZN17 KANSL1-231ENST00000639853 1425 ntTSL 59.26□□□□□ -0.938e-9■■□□□ 11.4
LIN28BQ6ZN17 KANSL1-217ENST00000638269 3365 ntTSL 59.15□□□□□ -0.948e-9■■□□□ 11.4
LIN28BQ6ZN17 KANSL1-205ENST00000572904 4973 ntAPPRIS P3 TSL 5 BASIC9.01□□□□□ -0.978e-9■■□□□ 11.4
LIN28BQ6ZN17 KANSL1-226ENST00000639375 3392 ntTSL 57.58□□□□□ -1.28e-9■■□□□ 11.4
LIN28BQ6ZN17 OPA1-216ENST00000487986 563 ntTSL 46.54□□□□□ -1.368e-9■■□□□ 11.4
LIN28BQ6ZN17 KANSL1-213ENST00000576248 452 ntTSL 34.48□□□□□ -1.698e-9■■□□□ 11.4
LIN28BQ6ZN17 OPA1-211ENST00000434811 554 ntTSL 42.79□□□□□ -1.968e-9■■□□□ 11.4
LIN28BQ6ZN17 FGFR4-213ENST00000511076 838 ntTSL 521.69■■□□□ 1.062e-8■■□□□ 11.4
LIN28BQ6ZN17 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.432e-8■■□□□ 11.4
LIN28BQ6ZN17 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.422e-8■■□□□ 11.4
LIN28BQ6ZN17 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.382e-8■■□□□ 11.4
LIN28BQ6ZN17 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.12e-8■■□□□ 11.4
LIN28BQ6ZN17 RPL11-203ENST00000458455 721 ntTSL 1 (best)13.84□□□□□ -0.194e-34■■□□□ 11.4
LIN28BQ6ZN17 RPL11-201ENST00000374550 634 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.84e-34■■□□□ 11.4
LIN28BQ6ZN17 RPL11-205ENST00000482370 879 ntTSL 1 (best)10.02□□□□□ -0.814e-34■■□□□ 11.4
LIN28BQ6ZN17 RPL11-202ENST00000443624 994 ntTSL 28.84□□□□□ -0.994e-34■■□□□ 11.4
LIN28BQ6ZN17 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.12e-8■■□□□ 11.4
LIN28BQ6ZN17 SRSF5-201ENST00000394366 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.152e-8■■□□□ 11.4
LIN28BQ6ZN17 SRSF5-215ENST00000556587 1863 ntTSL 1 (best)13.35□□□□□ -0.272e-8■■□□□ 11.4
LIN28BQ6ZN17 SRSF5-205ENST00000553635 1412 ntTSL 2 BASIC12.45□□□□□ -0.422e-8■■□□□ 11.4
LIN28BQ6ZN17 SRSF5-216ENST00000556647 644 ntTSL 211.65□□□□□ -0.542e-8■■□□□ 11.4
LIN28BQ6ZN17 SRSF5-217ENST00000557154 1500 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.572e-8■■□□□ 11.4
LIN28BQ6ZN17 SRSF5-213ENST00000556330 546 ntTSL 29.96□□□□□ -0.822e-8■■□□□ 11.4
LIN28BQ6ZN17 SRSF5-212ENST00000556184 2443 ntTSL 1 (best)9.6□□□□□ -0.872e-8■■□□□ 11.4
LIN28BQ6ZN17 SRSF5-219ENST00000557460 939 ntTSL 59.28□□□□□ -0.922e-8■■□□□ 11.4
LIN28BQ6ZN17 SRSF5-211ENST00000555547 2057 ntTSL 58.97□□□□□ -0.972e-8■■□□□ 11.4
LIN28BQ6ZN17 SRSF5-207ENST00000554465 3044 ntTSL 1 (best)8.28□□□□□ -1.082e-8■■□□□ 11.4
LIN28BQ6ZN17 COPB1-209ENST00000533096 547 ntTSL 415.27■□□□□ 0.046e-8■■□□□ 11.4
LIN28BQ6ZN17 COPB1-206ENST00000529210 607 ntTSL 413.66□□□□□ -0.226e-8■■□□□ 11.4
LIN28BQ6ZN17 COPB1-207ENST00000529866 729 ntTSL 212.23□□□□□ -0.456e-8■■□□□ 11.4
LIN28BQ6ZN17 COPB1-210ENST00000533533 537 ntTSL 410.03□□□□□ -0.86e-8■■□□□ 11.4
LIN28BQ6ZN17 COPB1-212ENST00000534771 576 ntTSL 41.02□□□□□ -2.256e-8■■□□□ 11.4
LIN28BQ6ZN17 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.47■□□□□ 0.875e-7■■□□□ 11.4
LIN28BQ6ZN17 HLA-F-220ENST00000434407 884 ntBASIC20.47■□□□□ 0.875e-7■■□□□ 11.4
LIN28BQ6ZN17 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.57■□□□□ 0.565e-7■■□□□ 11.4
LIN28BQ6ZN17 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.7■□□□□ 0.425e-7■■□□□ 11.4
LIN28BQ6ZN17 HLA-F-226ENST00000484704 1201 nt16.9■□□□□ 0.35e-7■■□□□ 11.4
LIN28BQ6ZN17 HLA-F-223ENST00000465459 623 nt16.04■□□□□ 0.165e-7■■□□□ 11.4
LIN28BQ6ZN17 HLA-F-229ENST00000489502 489 nt15.97■□□□□ 0.155e-7■■□□□ 11.4
LIN28BQ6ZN17 HLA-F-219ENST00000429294 796 nt15.16■□□□□ 0.025e-7■■□□□ 11.4
LIN28BQ6ZN17 HLA-F-230ENST00000606273 579 nt14.29□□□□□ -0.125e-7■■□□□ 11.4
LIN28BQ6ZN17 YWHAZ-216ENST00000521309 1399 ntTSL 2 BASIC12.43□□□□□ -0.426e-7■■□□□ 11.4
LIN28BQ6ZN17 SSU72-202ENST00000359060 4176 ntTSL 2 BASIC11.05□□□□□ -0.642e-7■■□□□ 11.4
LIN28BQ6ZN17 HSP90B1-208ENST00000551983 728 ntTSL 24.65□□□□□ -1.672e-17■■□□□ 11.4
LIN28BQ6ZN17 SFXN1-207ENST00000507395 527 ntTSL 220.18■□□□□ 0.822e-6■■□□□ 11.4
LIN28BQ6ZN17 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.033e-6■■□□□ 11.4
LIN28BQ6ZN17 MKNK2-203ENST00000585667 870 ntTSL 525.44■■□□□ 1.663e-6■■□□□ 11.4
LIN28BQ6ZN17 BMP2K-202ENST00000389010 2741 ntTSL 1 (best)21.77■■□□□ 1.074e-10■■□□□ 11.4
LIN28BQ6ZN17 MKNK2-205ENST00000586828 1503 ntTSL 221.58■■□□□ 1.043e-6■■□□□ 11.4
LIN28BQ6ZN17 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 14e-10■■□□□ 11.4
LIN28BQ6ZN17 MKNK2-204ENST00000586620 1135 ntTSL 220.35■□□□□ 0.853e-6■■□□□ 11.4
LIN28BQ6ZN17 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.56■□□□□ 0.723e-6■■□□□ 11.4
LIN28BQ6ZN17 JMJD1C-211ENST00000633035 499 ntTSL 318.65■□□□□ 0.583e-6■■□□□ 11.4
LIN28BQ6ZN17 MKNK2-207ENST00000588014 2413 ntTSL 216.88■□□□□ 0.293e-6■■□□□ 11.4
LIN28BQ6ZN17 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.273e-6■■□□□ 11.4
LIN28BQ6ZN17 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.47□□□□□ -0.093e-6■■□□□ 11.4
LIN28BQ6ZN17 PYGL-206ENST00000544180 2696 ntTSL 2 BASIC13.11□□□□□ -0.313e-6■■□□□ 11.4
LIN28BQ6ZN17 MKNK2-206ENST00000587416 4093 ntTSL 212.61□□□□□ -0.393e-6■■□□□ 11.4
LIN28BQ6ZN17 PYGL-202ENST00000528757 426 ntTSL 312.06□□□□□ -0.483e-6■■□□□ 11.4
LIN28BQ6ZN17 PYGL-205ENST00000532462 2711 ntTSL 1 (best) BASIC11.15□□□□□ -0.623e-6■■□□□ 11.4
LIN28BQ6ZN17 MKNK2-213ENST00000591601 3582 ntAPPRIS P4 TSL 1 (best) BASIC11.11□□□□□ -0.633e-6■■□□□ 11.4
LIN28BQ6ZN17 MKNK2-211ENST00000591142 875 ntTSL 2 BASIC10.16□□□□□ -0.783e-6■■□□□ 11.4
LIN28BQ6ZN17 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.34■□□□□ 0.376e-6■■□□□ 11.4
LIN28BQ6ZN17 ELP6-206ENST00000442215 1277 ntTSL 517.26■□□□□ 0.356e-6■■□□□ 11.4
LIN28BQ6ZN17 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.296e-6■■□□□ 11.4
LIN28BQ6ZN17 RBBP7-205ENST00000416035 857 ntTSL 39.2□□□□□ -0.941e-7■■□□□ 11.4
LIN28BQ6ZN17 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC24.39■■□□□ 1.493e-9■■□□□ 11.4
LIN28BQ6ZN17 G3BP1-204ENST00000517947 558 ntTSL 413.24□□□□□ -0.293e-6■■□□□ 11.4
LIN28BQ6ZN17 G3BP1-210ENST00000522367 580 ntTSL 313.24□□□□□ -0.293e-6■■□□□ 11.4
LIN28BQ6ZN17 KRT8-206ENST00000546900 523 ntTSL 323■■□□□ 1.272e-9■■□□□ 11.4
LIN28BQ6ZN17 KRT8-210ENST00000548998 918 ntTSL 520.15■□□□□ 0.822e-9■■□□□ 11.4
LIN28BQ6ZN17 KRT8-204ENST00000546826 1165 ntTSL 519.24■□□□□ 0.672e-9■■□□□ 11.4
LIN28BQ6ZN17 KRT8-209ENST00000547176 250 ntTSL 515.59■□□□□ 0.092e-9■■□□□ 11.4
LIN28BQ6ZN17 EIF3I-202ENST00000373586 1458 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.311e-8■■□□□ 11.4
LIN28BQ6ZN17 EIF3I-204ENST00000474371 643 ntTSL 37.61□□□□□ -1.191e-8■■□□□ 11.4
LIN28BQ6ZN17 HNRNPDL-209ENST00000630114 1433 ntTSL 523.24■■□□□ 1.315e-8■■□□□ 11.4
LIN28BQ6ZN17 HNRNPDL-203ENST00000502762 2356 ntTSL 1 (best)20.5■□□□□ 0.875e-8■■□□□ 11.4
LIN28BQ6ZN17 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.745e-8■■□□□ 11.4
LIN28BQ6ZN17 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.65e-8■■□□□ 11.4
LIN28BQ6ZN17 HNRNPDL-202ENST00000349655 1402 ntTSL 1 (best)18.64■□□□□ 0.575e-8■■□□□ 11.4
LIN28BQ6ZN17 HNRNPDL-205ENST00000514511 1143 ntTSL 218.12■□□□□ 0.495e-8■■□□□ 11.4
LIN28BQ6ZN17 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.045e-8■■□□□ 11.4
LIN28BQ6ZN17 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC13.77□□□□□ -0.215e-8■■□□□ 11.4
LIN28BQ6ZN17 HNRNPDL-201ENST00000295470 3781 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.695e-8■■□□□ 11.4
LIN28BQ6ZN17 HNRNPDL-204ENST00000507721 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC9.44□□□□□ -0.95e-8■■□□□ 11.4
LIN28BQ6ZN17 ACTN4-210ENST00000588618 1729 ntTSL 1 (best)24.41■■□□□ 1.52e-6■□□□□ 11.3
LIN28BQ6ZN17 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.56■□□□□ 0.562e-6■□□□□ 11.3
LIN28BQ6ZN17 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC15.14■□□□□ 0.012e-6■□□□□ 11.3
LIN28BQ6ZN17 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.11e-8■□□□□ 11.3
Retrieved 100 of 21,972 protein–RNA pairs in 485.2 ms