RNA–Protein interactions for RNA: ENST00000429294.3

HLA-F-219, Transcript of major histocompatibility complex, class I, F, humanhuman

Gene HLA-F, Length 796 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-F-219ENST00000429294 NISCHQ9Y2I1 1504 aa32.8■■■□□ 2.84
HLA-F-219ENST00000429294 ABCC9O60706 1549 aa29.61■■■□□ 2.33
HLA-F-219ENST00000429294 CCDC180Q9P1Z9 1646 aa29.46■■■□□ 2.31
HLA-F-219ENST00000429294 RB1CC1Q8TDY2 1594 aa28.16■■■□□ 2.1
HLA-F-219ENST00000429294 NACADO15069 1562 aa27.93■■■□□ 2.06
HLA-F-219ENST00000429294 DCAF8L2P0C7V8 631 aa27.88■■■□□ 2.05
HLA-F-219ENST00000429294 DNAJC5BQ9UF47 199 aa27.84■■■□□ 2.05
HLA-F-219ENST00000429294 PABPN1Q86U42 306 aaKnown RBP eCLIP27.58■■■□□ 2.01
HLA-F-219ENST00000429294 MYO15BQ96JP2 1530 aa27.49■■□□□ 1.99
HLA-F-219ENST00000429294 UNC13AQ9UPW8 1703 aa27.4■■□□□ 1.98
HLA-F-219ENST00000429294 BICRAQ9NZM4 1560 aa27.24■■□□□ 1.95
HLA-F-219ENST00000429294 ZCCHC6Q5VYS8 1495 aaKnown RBP27.13■■□□□ 1.93
HLA-F-219ENST00000429294 DCAF1Q9Y4B6 1507 aa27.09■■□□□ 1.93
HLA-F-219ENST00000429294 SHROOM4Q9ULL8 1493 aa26.97■■□□□ 1.91
HLA-F-219ENST00000429294 SCRIBQ14160 1630 aa26.84■■□□□ 1.89
HLA-F-219ENST00000429294 CC2D2AQ9P2K1 1620 aa26.72■■□□□ 1.87
HLA-F-219ENST00000429294 CECR2Q9BXF3 1484 aa26.71■■□□□ 1.87
HLA-F-219ENST00000429294 EIF4G1Q04637 1599 aaKnown RBP26.64■■□□□ 1.86
HLA-F-219ENST00000429294 NCAPD3P42695 1498 aa25.79■■□□□ 1.72
HLA-F-219ENST00000429294 DNAJC5Q9H3Z4 198 aa25.73■■□□□ 1.71
HLA-F-219ENST00000429294 ATAD2BQ9ULI0 1458 aa25.67■■□□□ 1.7
HLA-F-219ENST00000429294 ERCC6Q03468 1493 aa25.65■■□□□ 1.7
HLA-F-219ENST00000429294 SMARCA2P51531 1590 aa25.63■■□□□ 1.69
HLA-F-219ENST00000429294 CUX2O14529 1486 aa25.6■■□□□ 1.69
HLA-F-219ENST00000429294 SMARCA4P51532 1647 aa25.59■■□□□ 1.69
HLA-F-219ENST00000429294 HMGXB3Q12766 1538 aa25.56■■□□□ 1.68
HLA-F-219ENST00000429294 BAZ1AQ9NRL2 1556 aaPredicted RBP25.49■■□□□ 1.67
HLA-F-219ENST00000429294 BAZ1BQ9UIG0 1483 aaKnown RBP25.46■■□□□ 1.67
HLA-F-219ENST00000429294 NESP48681 1621 aa25.37■■□□□ 1.65
HLA-F-219ENST00000429294 PEG3Q9GZU2 1588 aa25.34■■□□□ 1.65
HLA-F-219ENST00000429294 MROH2BQ7Z745 1585 aa25.24■■□□□ 1.63
HLA-F-219ENST00000429294 LAMC3Q9Y6N6 1575 aa25.22■■□□□ 1.63
HLA-F-219ENST00000429294 PDS5BQ9NTI5 1447 aa25.14■■□□□ 1.62
HLA-F-219ENST00000429294 THOC2Q8NI27 1593 aaKnown RBP25.1■■□□□ 1.61
HLA-F-219ENST00000429294 CADPSQ9ULU8 1353 aa25.02■■□□□ 1.6
HLA-F-219ENST00000429294 KIF21AQ7Z4S6 1674 aa25.01■■□□□ 1.59
HLA-F-219ENST00000429294 WIZO95785 1651 aa24.92■■□□□ 1.58
HLA-F-219ENST00000429294 MRC2Q9UBG0 1479 aa24.88■■□□□ 1.57
HLA-F-219ENST00000429294 WDR62O43379 1518 aa24.78■■□□□ 1.56
HLA-F-219ENST00000429294 CEP164Q9UPV0 1460 aa24.77■■□□□ 1.56
HLA-F-219ENST00000429294 FANCD2Q9BXW9 1451 aa24.71■■□□□ 1.55
HLA-F-219ENST00000429294 RSF1Q96T23 1441 aaPredicted RBP24.71■■□□□ 1.55
HLA-F-219ENST00000429294 CFTRP13569 1480 aa24.68■■□□□ 1.54
HLA-F-219ENST00000429294 TOP2AP11388 1531 aaKnown RBP24.63■■□□□ 1.53
HLA-F-219ENST00000429294 TRIM41Q8WV44 630 aa24.6■■□□□ 1.53
HLA-F-219ENST00000429294 OSCARQ8IYS5 282 aa24.48■■□□□ 1.51
HLA-F-219ENST00000429294 URB2Q14146 1524 aaKnown RBP24.47■■□□□ 1.51
HLA-F-219ENST00000429294 PRDM2Q13029 1718 aa24.37■■□□□ 1.49
HLA-F-219ENST00000429294 CCDC88BA6NC98 1476 aa24.37■■□□□ 1.49
HLA-F-219ENST00000429294 IFT140Q96RY7 1462 aa24.28■■□□□ 1.48
HLA-F-219ENST00000429294 ABCC8Q09428 1581 aa24.23■■□□□ 1.47
HLA-F-219ENST00000429294 TOPBP1Q92547 1522 aa24.21■■□□□ 1.47
HLA-F-219ENST00000429294 ZNF608Q9ULD9 1512 aaPredicted RBP24.19■■□□□ 1.46
HLA-F-219ENST00000429294 DNMBPQ6XZF7 1577 aa24.12■■□□□ 1.45
HLA-F-219ENST00000429294 EIF4G3O43432 1585 aaKnown RBP24.05■■□□□ 1.44
HLA-F-219ENST00000429294 RIMBP3CA6NJZ7 1639 aa24.05■■□□□ 1.44
HLA-F-219ENST00000429294 RIMBP3BA6NNM3 1639 aa24.05■■□□□ 1.44
HLA-F-219ENST00000429294 RIMBP3Q9UFD9 1639 aa24.05■■□□□ 1.44
HLA-F-219ENST00000429294 AQRO60306 1485 aaKnown RBP eCLIP24■■□□□ 1.43
HLA-F-219ENST00000429294 ARHGEF11O15085 1522 aa23.99■■□□□ 1.43
HLA-F-219ENST00000429294 TARBP1Q13395 1621 aaKnown RBP23.97■■□□□ 1.43
HLA-F-219ENST00000429294 FBLN2P98095 1184 aa23.96■■□□□ 1.43
HLA-F-219ENST00000429294 POLA1P09884 1462 aaPredicted RBP23.95■■□□□ 1.42
HLA-F-219ENST00000429294 CYB5RLQ6IPT4 315 aa23.9■■□□□ 1.42
HLA-F-219ENST00000429294 SOGA1O94964 1423 aa23.9■■□□□ 1.42
HLA-F-219ENST00000429294 CHD1O14646 1710 aa23.88■■□□□ 1.41
HLA-F-219ENST00000429294 RAD54L2Q9Y4B4 1467 aa23.87■■□□□ 1.41
HLA-F-219ENST00000429294 TDRD9Q8NDG6 1382 aaKnown RBP23.85■■□□□ 1.41
HLA-F-219ENST00000429294 FGD5Q6ZNL6 1462 aa23.8■■□□□ 1.4
HLA-F-219ENST00000429294 WDR97A6NE52 1622 aa23.77■■□□□ 1.4
HLA-F-219ENST00000429294 CHMP7Q8WUX9 453 aaPredicted RBP23.77■■□□□ 1.4
HLA-F-219ENST00000429294 SNAPC4Q5SXM2 1469 aa23.75■■□□□ 1.39
HLA-F-219ENST00000429294 CUX1P39880 1505 aa23.73■■□□□ 1.39
HLA-F-219ENST00000429294 TRHP20396 242 aaPredicted RBP23.72■■□□□ 1.39
HLA-F-219ENST00000429294 ARAP1Q96P48 1450 aa23.72■■□□□ 1.39
HLA-F-219ENST00000429294 MAGI1Q96QZ7 1491 aaPredicted RBP23.7■■□□□ 1.38
HLA-F-219ENST00000429294 GRIN2BQ13224 1484 aa23.69■■□□□ 1.38
HLA-F-219ENST00000429294 SYNJ1O43426 1573 aa23.65■■□□□ 1.38
HLA-F-219ENST00000429294 SYNJ2O15056 1496 aa23.62■■□□□ 1.37
HLA-F-219ENST00000429294 SUPT5HO00267 1087 aaKnown RBP23.62■■□□□ 1.37
HLA-F-219ENST00000429294 CLASP1Q7Z460 1538 aa23.6■■□□□ 1.37
HLA-F-219ENST00000429294 GAPVD1Q14C86 1478 aa23.6■■□□□ 1.37
HLA-F-219ENST00000429294 ABCA10Q8WWZ4 1543 aa23.53■■□□□ 1.36
HLA-F-219ENST00000429294 PBRM1Q86U86 1689 aa23.52■■□□□ 1.36
HLA-F-219ENST00000429294 WRNQ14191 1432 aaPredicted RBP eCLIP23.47■■□□□ 1.35
HLA-F-219ENST00000429294 ABCA5Q8WWZ7 1642 aa23.45■■□□□ 1.34
HLA-F-219ENST00000429294 GRIN2AQ12879 1464 aa23.36■■□□□ 1.33
HLA-F-219ENST00000429294 TOP2BQ02880 1626 aa23.33■■□□□ 1.33
HLA-F-219ENST00000429294 BIVM-ERCC5R4GMW8 1640 aa23.31■■□□□ 1.32
HLA-F-219ENST00000429294 ADAMTS12P58397 1594 aa23.31■■□□□ 1.32
HLA-F-219ENST00000429294 FHAD1B1AJZ9 1412 aa23.3■■□□□ 1.32
HLA-F-219ENST00000429294 NUP160Q12769 1436 aa23.28■■□□□ 1.32
HLA-F-219ENST00000429294 ERICH3Q5RHP9 1530 aa23.24■■□□□ 1.31
HLA-F-219ENST00000429294 CEP170Q5SW79 1584 aa23.23■■□□□ 1.31
HLA-F-219ENST00000429294 ERCC6L2Q5T890 1561 aa23.2■■□□□ 1.3
HLA-F-219ENST00000429294 AEBP2Q6ZN18 517 aaPredicted RBP23.15■■□□□ 1.3
HLA-F-219ENST00000429294 SHROOM2Q13796 1616 aa23.15■■□□□ 1.3
HLA-F-219ENST00000429294 JPH4Q96JJ6 628 aa23.12■■□□□ 1.29
HLA-F-219ENST00000429294 PRG4Q92954 1404 aaPredicted RBP23.1■■□□□ 1.29
HLA-F-219ENST00000429294 NPM1P06748 294 aaKnown RBP eCLIP23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms