RNA–Protein interactions for RNA: ENST00000465459.2

HLA-F-223, Transcript of major histocompatibility complex, class I, F, humanhuman

Gene HLA-F, Length 623 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-F-223ENST00000465459 NISCHQ9Y2I1 1504 aa34.9■■■■□ 3.18
HLA-F-223ENST00000465459 CCDC180Q9P1Z9 1646 aa30.84■■■□□ 2.53
HLA-F-223ENST00000465459 ABCC9O60706 1549 aa29.69■■■□□ 2.34
HLA-F-223ENST00000465459 ZCCHC6Q5VYS8 1495 aaKnown RBP29.16■■■□□ 2.26
HLA-F-223ENST00000465459 DCAF1Q9Y4B6 1507 aa28.96■■■□□ 2.23
HLA-F-223ENST00000465459 MYO15BQ96JP2 1530 aa28.94■■■□□ 2.22
HLA-F-223ENST00000465459 NACADO15069 1562 aa28.92■■■□□ 2.22
HLA-F-223ENST00000465459 DCAF8L2P0C7V8 631 aa28.91■■■□□ 2.22
HLA-F-223ENST00000465459 RB1CC1Q8TDY2 1594 aa28.82■■■□□ 2.2
HLA-F-223ENST00000465459 SCRIBQ14160 1630 aa28.09■■■□□ 2.09
HLA-F-223ENST00000465459 UNC13AQ9UPW8 1703 aa28.06■■■□□ 2.08
HLA-F-223ENST00000465459 BICRAQ9NZM4 1560 aa27.88■■■□□ 2.05
HLA-F-223ENST00000465459 PABPN1Q86U42 306 aaKnown RBP eCLIP27.81■■■□□ 2.04
HLA-F-223ENST00000465459 SHROOM4Q9ULL8 1493 aa27.76■■■□□ 2.03
HLA-F-223ENST00000465459 EIF4G1Q04637 1599 aaKnown RBP27.13■■□□□ 1.93
HLA-F-223ENST00000465459 CECR2Q9BXF3 1484 aa27.08■■□□□ 1.93
HLA-F-223ENST00000465459 BAZ1AQ9NRL2 1556 aaPredicted RBP27.03■■□□□ 1.92
HLA-F-223ENST00000465459 SMARCA4P51532 1647 aa26.95■■□□□ 1.91
HLA-F-223ENST00000465459 CC2D2AQ9P2K1 1620 aa26.89■■□□□ 1.9
HLA-F-223ENST00000465459 MROH2BQ7Z745 1585 aa26.86■■□□□ 1.89
HLA-F-223ENST00000465459 DNAJC5BQ9UF47 199 aa26.84■■□□□ 1.89
HLA-F-223ENST00000465459 RSF1Q96T23 1441 aaPredicted RBP26.75■■□□□ 1.87
HLA-F-223ENST00000465459 SMARCA2P51531 1590 aa26.74■■□□□ 1.87
HLA-F-223ENST00000465459 PEG3Q9GZU2 1588 aa26.74■■□□□ 1.87
HLA-F-223ENST00000465459 ATAD2BQ9ULI0 1458 aa26.73■■□□□ 1.87
HLA-F-223ENST00000465459 NCAPD3P42695 1498 aa26.68■■□□□ 1.86
HLA-F-223ENST00000465459 HMGXB3Q12766 1538 aa26.57■■□□□ 1.84
HLA-F-223ENST00000465459 WIZO95785 1651 aa26.56■■□□□ 1.84
HLA-F-223ENST00000465459 BAZ1BQ9UIG0 1483 aaKnown RBP26.52■■□□□ 1.84
HLA-F-223ENST00000465459 TOP2AP11388 1531 aaKnown RBP26.37■■□□□ 1.81
HLA-F-223ENST00000465459 SUPT5HO00267 1087 aaKnown RBP26.35■■□□□ 1.81
HLA-F-223ENST00000465459 CCDC88BA6NC98 1476 aa26.04■■□□□ 1.76
HLA-F-223ENST00000465459 CADPSQ9ULU8 1353 aa25.92■■□□□ 1.74
HLA-F-223ENST00000465459 LAMC3Q9Y6N6 1575 aa25.88■■□□□ 1.73
HLA-F-223ENST00000465459 CFTRP13569 1480 aa25.85■■□□□ 1.73
HLA-F-223ENST00000465459 NESP48681 1621 aa25.81■■□□□ 1.72
HLA-F-223ENST00000465459 PDS5BQ9NTI5 1447 aa25.72■■□□□ 1.71
HLA-F-223ENST00000465459 PRDM2Q13029 1718 aa25.63■■□□□ 1.69
HLA-F-223ENST00000465459 ERCC6Q03468 1493 aa25.59■■□□□ 1.69
HLA-F-223ENST00000465459 FANCD2Q9BXW9 1451 aa25.59■■□□□ 1.69
HLA-F-223ENST00000465459 CEP164Q9UPV0 1460 aa25.52■■□□□ 1.68
HLA-F-223ENST00000465459 KIF21AQ7Z4S6 1674 aa25.5■■□□□ 1.67
HLA-F-223ENST00000465459 MRC2Q9UBG0 1479 aa25.4■■□□□ 1.66
HLA-F-223ENST00000465459 THOC2Q8NI27 1593 aaKnown RBP25.34■■□□□ 1.65
HLA-F-223ENST00000465459 ABCC8Q09428 1581 aa25.32■■□□□ 1.64
HLA-F-223ENST00000465459 WDR62O43379 1518 aa25.29■■□□□ 1.64
HLA-F-223ENST00000465459 URB2Q14146 1524 aaKnown RBP25.28■■□□□ 1.64
HLA-F-223ENST00000465459 DNMBPQ6XZF7 1577 aa25.24■■□□□ 1.63
HLA-F-223ENST00000465459 TOPBP1Q92547 1522 aa25.22■■□□□ 1.63
HLA-F-223ENST00000465459 WRNQ14191 1432 aaPredicted RBP eCLIP25.21■■□□□ 1.63
HLA-F-223ENST00000465459 CUX2O14529 1486 aa25.21■■□□□ 1.63
HLA-F-223ENST00000465459 CUX1P39880 1505 aa25.17■■□□□ 1.62
HLA-F-223ENST00000465459 TOP2BQ02880 1626 aa25.1■■□□□ 1.61
HLA-F-223ENST00000465459 BIVM-ERCC5R4GMW8 1640 aa25.08■■□□□ 1.61
HLA-F-223ENST00000465459 SYNJ1O43426 1573 aa25.07■■□□□ 1.6
HLA-F-223ENST00000465459 POLA1P09884 1462 aaPredicted RBP25.04■■□□□ 1.6
HLA-F-223ENST00000465459 FGD5Q6ZNL6 1462 aa25.02■■□□□ 1.6
HLA-F-223ENST00000465459 IFT140Q96RY7 1462 aa24.99■■□□□ 1.59
HLA-F-223ENST00000465459 SOGA1O94964 1423 aa24.96■■□□□ 1.59
HLA-F-223ENST00000465459 TRIM41Q8WV44 630 aa24.92■■□□□ 1.58
HLA-F-223ENST00000465459 TARBP1Q13395 1621 aaKnown RBP24.9■■□□□ 1.58
HLA-F-223ENST00000465459 CHIC1Q5VXU3 224 aa24.89■■□□□ 1.58
HLA-F-223ENST00000465459 RAD54L2Q9Y4B4 1467 aa24.89■■□□□ 1.57
HLA-F-223ENST00000465459 ABCA10Q8WWZ4 1543 aa24.85■■□□□ 1.57
HLA-F-223ENST00000465459 WDR97A6NE52 1622 aa24.81■■□□□ 1.56
HLA-F-223ENST00000465459 ZNF608Q9ULD9 1512 aaPredicted RBP24.77■■□□□ 1.56
HLA-F-223ENST00000465459 TDRD9Q8NDG6 1382 aaKnown RBP24.74■■□□□ 1.55
HLA-F-223ENST00000465459 EIF4G3O43432 1585 aaKnown RBP24.7■■□□□ 1.54
HLA-F-223ENST00000465459 AQRO60306 1485 aaKnown RBP eCLIP24.7■■□□□ 1.54
HLA-F-223ENST00000465459 KIF27Q86VH2 1401 aa24.68■■□□□ 1.54
HLA-F-223ENST00000465459 ABCA5Q8WWZ7 1642 aa24.68■■□□□ 1.54
HLA-F-223ENST00000465459 GAPVD1Q14C86 1478 aa24.67■■□□□ 1.54
HLA-F-223ENST00000465459 GRIN2BQ13224 1484 aa24.64■■□□□ 1.53
HLA-F-223ENST00000465459 ERICH3Q5RHP9 1530 aa24.57■■□□□ 1.52
HLA-F-223ENST00000465459 EEA1Q15075 1411 aa24.54■■□□□ 1.52
HLA-F-223ENST00000465459 PBRM1Q86U86 1689 aa24.53■■□□□ 1.52
HLA-F-223ENST00000465459 MAGI1Q96QZ7 1491 aaPredicted RBP24.53■■□□□ 1.52
HLA-F-223ENST00000465459 IGF1RP08069 1367 aa24.52■■□□□ 1.52
HLA-F-223ENST00000465459 SNAPC4Q5SXM2 1469 aa24.49■■□□□ 1.51
HLA-F-223ENST00000465459 RUSC2Q8N2Y8 1516 aa24.49■■□□□ 1.51
HLA-F-223ENST00000465459 FHAD1B1AJZ9 1412 aa24.44■■□□□ 1.5
HLA-F-223ENST00000465459 SYNJ2O15056 1496 aa24.42■■□□□ 1.5
HLA-F-223ENST00000465459 CUL7Q14999 1698 aa24.41■■□□□ 1.5
HLA-F-223ENST00000465459 CSRNP3Q8WYN3 585 aa24.4■■□□□ 1.5
HLA-F-223ENST00000465459 ADAMTS12P58397 1594 aa24.4■■□□□ 1.5
HLA-F-223ENST00000465459 CHMP7Q8WUX9 453 aaPredicted RBP24.37■■□□□ 1.49
HLA-F-223ENST00000465459 CARMIL1Q5VZK9 1371 aa24.37■■□□□ 1.49
HLA-F-223ENST00000465459 FBLN2P98095 1184 aa24.32■■□□□ 1.48
HLA-F-223ENST00000465459 FAM9AQ8IZU1 332 aaPredicted RBP24.31■■□□□ 1.48
HLA-F-223ENST00000465459 PRXQ9BXM0 1461 aa24.31■■□□□ 1.48
HLA-F-223ENST00000465459 GRIN2AQ12879 1464 aa24.29■■□□□ 1.48
HLA-F-223ENST00000465459 RAPGEF2Q9Y4G8 1499 aa24.28■■□□□ 1.48
HLA-F-223ENST00000465459 CHD1O14646 1710 aa24.27■■□□□ 1.48
HLA-F-223ENST00000465459 OSCARQ8IYS5 282 aa24.25■■□□□ 1.47
HLA-F-223ENST00000465459 NUP160Q12769 1436 aa24.18■■□□□ 1.46
HLA-F-223ENST00000465459 KIF21BO75037 1637 aa24.18■■□□□ 1.46
HLA-F-223ENST00000465459 CEP170Q5SW79 1584 aa24.11■■□□□ 1.45
HLA-F-223ENST00000465459 GOLGA3Q08378 1498 aa24.08■■□□□ 1.45
HLA-F-223ENST00000465459 KIAA0586Q9BVV6 1533 aa24.08■■□□□ 1.45
HLA-F-223ENST00000465459 CLASP1Q7Z460 1538 aa24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms