RNA–Protein interactions for RNA: ENST00000334668.8

HLA-F-217, Transcript of major histocompatibility complex, class I, F, humanhuman

APPRIS ALT2 BASIC

Gene HLA-F, Length 1,283 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-F-217ENST00000334668 NISCHQ9Y2I1 1504 aa44.68■■■■■ 4.74
HLA-F-217ENST00000334668 AEBP2Q6ZN18 517 aaPredicted RBP42.61■■■■■ 4.41
HLA-F-217ENST00000334668 CHIC1Q5VXU3 224 aa40.68■■■■■ 4.1
HLA-F-217ENST00000334668 CCDC180Q9P1Z9 1646 aa39.71■■■■□ 3.95
HLA-F-217ENST00000334668 ABCC9O60706 1549 aa38.69■■■■□ 3.78
HLA-F-217ENST00000334668 NACADO15069 1562 aa37.31■■■■□ 3.56
HLA-F-217ENST00000334668 RB1CC1Q8TDY2 1594 aa37.3■■■■□ 3.56
HLA-F-217ENST00000334668 ZCCHC6Q5VYS8 1495 aaKnown RBP37.25■■■■□ 3.55
HLA-F-217ENST00000334668 MYO15BQ96JP2 1530 aa37.17■■■■□ 3.54
HLA-F-217ENST00000334668 DCAF8L2P0C7V8 631 aa37.14■■■■□ 3.54
HLA-F-217ENST00000334668 DCAF1Q9Y4B6 1507 aa37.03■■■■□ 3.52
HLA-F-217ENST00000334668 UNC13AQ9UPW8 1703 aa36.53■■■■□ 3.44
HLA-F-217ENST00000334668 SENP3Q9H4L4 574 aaPredicted RBP36.27■■■■□ 3.4
HLA-F-217ENST00000334668 BICRAQ9NZM4 1560 aa36.23■■■■□ 3.39
HLA-F-217ENST00000334668 SCRIBQ14160 1630 aa36.16■■■■□ 3.38
HLA-F-217ENST00000334668 PABPN1Q86U42 306 aaKnown RBP eCLIP36.15■■■■□ 3.38
HLA-F-217ENST00000334668 PHF23Q9BUL5 403 aaPredicted RBP35.87■■■■□ 3.33
HLA-F-217ENST00000334668 SHROOM4Q9ULL8 1493 aa35.86■■■■□ 3.33
HLA-F-217ENST00000334668 DNAJC5BQ9UF47 199 aa35.5■■■■□ 3.27
HLA-F-217ENST00000334668 EIF4G1Q04637 1599 aaKnown RBP35.22■■■■□ 3.23
HLA-F-217ENST00000334668 CC2D2AQ9P2K1 1620 aa35.05■■■■□ 3.2
HLA-F-217ENST00000334668 CECR2Q9BXF3 1484 aa34.78■■■■□ 3.16
HLA-F-217ENST00000334668 SMARCA4P51532 1647 aa34.65■■■■□ 3.14
HLA-F-217ENST00000334668 BAZ1AQ9NRL2 1556 aaPredicted RBP34.61■■■■□ 3.13
HLA-F-217ENST00000334668 ATAD2BQ9ULI0 1458 aa34.45■■■■□ 3.1
HLA-F-217ENST00000334668 NCAPD3P42695 1498 aa34.44■■■■□ 3.1
HLA-F-217ENST00000334668 MROH2BQ7Z745 1585 aa34.42■■■■□ 3.1
HLA-F-217ENST00000334668 SMARCA2P51531 1590 aa34.4■■■■□ 3.1
HLA-F-217ENST00000334668 PEG3Q9GZU2 1588 aa34.36■■■■□ 3.09
HLA-F-217ENST00000334668 HMGXB3Q12766 1538 aa34.27■■■■□ 3.08
HLA-F-217ENST00000334668 BAZ1BQ9UIG0 1483 aaKnown RBP34.13■■■■□ 3.05
HLA-F-217ENST00000334668 RSF1Q96T23 1441 aaPredicted RBP34.06■■■■□ 3.04
HLA-F-217ENST00000334668 WIZO95785 1651 aa34.05■■■■□ 3.04
HLA-F-217ENST00000334668 FOXD1Q16676 465 aa33.81■■■■□ 3
HLA-F-217ENST00000334668 TOP2AP11388 1531 aaKnown RBP33.7■■■□□ 2.99
HLA-F-217ENST00000334668 NESP48681 1621 aa33.53■■■□□ 2.96
HLA-F-217ENST00000334668 LAMC3Q9Y6N6 1575 aa33.5■■■□□ 2.95
HLA-F-217ENST00000334668 CADPSQ9ULU8 1353 aa33.41■■■□□ 2.94
HLA-F-217ENST00000334668 ERCC6Q03468 1493 aa33.32■■■□□ 2.92
HLA-F-217ENST00000334668 CCDC88BA6NC98 1476 aa33.3■■■□□ 2.92
HLA-F-217ENST00000334668 CFTRP13569 1480 aa33.25■■■□□ 2.91
HLA-F-217ENST00000334668 PDS5BQ9NTI5 1447 aa33.24■■■□□ 2.91
HLA-F-217ENST00000334668 KIF21AQ7Z4S6 1674 aa33.17■■■□□ 2.9
HLA-F-217ENST00000334668 SUPT5HO00267 1087 aaKnown RBP33.13■■■□□ 2.89
HLA-F-217ENST00000334668 THOC2Q8NI27 1593 aaKnown RBP33.04■■■□□ 2.88
HLA-F-217ENST00000334668 PRDM2Q13029 1718 aa33.03■■■□□ 2.88
HLA-F-217ENST00000334668 CUX2O14529 1486 aa33.03■■■□□ 2.88
HLA-F-217ENST00000334668 FANCD2Q9BXW9 1451 aa33■■■□□ 2.87
HLA-F-217ENST00000334668 CEP164Q9UPV0 1460 aa32.94■■■□□ 2.86
HLA-F-217ENST00000334668 MRC2Q9UBG0 1479 aa32.89■■■□□ 2.86
HLA-F-217ENST00000334668 WDR62O43379 1518 aa32.82■■■□□ 2.84
HLA-F-217ENST00000334668 URB2Q14146 1524 aaKnown RBP32.69■■■□□ 2.82
HLA-F-217ENST00000334668 PLPPR3Q6T4P5 718 aa32.61■■■□□ 2.81
HLA-F-217ENST00000334668 ABCC8Q09428 1581 aa32.51■■■□□ 2.79
HLA-F-217ENST00000334668 TOPBP1Q92547 1522 aa32.51■■■□□ 2.79
HLA-F-217ENST00000334668 DNMBPQ6XZF7 1577 aa32.47■■■□□ 2.79
HLA-F-217ENST00000334668 CUX1P39880 1505 aa32.29■■■□□ 2.76
HLA-F-217ENST00000334668 IFT140Q96RY7 1462 aa32.28■■■□□ 2.76
HLA-F-217ENST00000334668 POLA1P09884 1462 aaPredicted RBP32.23■■■□□ 2.75
HLA-F-217ENST00000334668 TARBP1Q13395 1621 aaKnown RBP32.17■■■□□ 2.74
HLA-F-217ENST00000334668 FGD5Q6ZNL6 1462 aa32.14■■■□□ 2.74
HLA-F-217ENST00000334668 ZNF608Q9ULD9 1512 aaPredicted RBP32.11■■■□□ 2.73
HLA-F-217ENST00000334668 WRNQ14191 1432 aaPredicted RBP eCLIP32.09■■■□□ 2.73
HLA-F-217ENST00000334668 SOGA1O94964 1423 aa32.08■■■□□ 2.73
HLA-F-217ENST00000334668 RAD54L2Q9Y4B4 1467 aa32.06■■■□□ 2.72
HLA-F-217ENST00000334668 BIVM-ERCC5R4GMW8 1640 aa32.05■■■□□ 2.72
HLA-F-217ENST00000334668 TOP2BQ02880 1626 aa32.04■■■□□ 2.72
HLA-F-217ENST00000334668 SYNJ1O43426 1573 aa32.02■■■□□ 2.72
HLA-F-217ENST00000334668 EIF4G3O43432 1585 aaKnown RBP31.98■■■□□ 2.71
HLA-F-217ENST00000334668 WDR97A6NE52 1622 aa31.93■■■□□ 2.7
HLA-F-217ENST00000334668 AQRO60306 1485 aaKnown RBP eCLIP31.93■■■□□ 2.7
HLA-F-217ENST00000334668 DNAJC5Q9H3Z4 198 aa31.92■■■□□ 2.7
HLA-F-217ENST00000334668 ABCA10Q8WWZ4 1543 aa31.88■■■□□ 2.69
HLA-F-217ENST00000334668 TDRD9Q8NDG6 1382 aaKnown RBP31.87■■■□□ 2.69
HLA-F-217ENST00000334668 PPP6R1Q9UPN7 881 aa31.83■■■□□ 2.69
HLA-F-217ENST00000334668 ADRA2BP18089 450 aa31.74■■■□□ 2.67
HLA-F-217ENST00000334668 ABCA5Q8WWZ7 1642 aa31.74■■■□□ 2.67
HLA-F-217ENST00000334668 GAPVD1Q14C86 1478 aa31.72■■■□□ 2.67
HLA-F-217ENST00000334668 GRIN2BQ13224 1484 aa31.71■■■□□ 2.67
HLA-F-217ENST00000334668 PBRM1Q86U86 1689 aa31.66■■■□□ 2.66
HLA-F-217ENST00000334668 PIAS4Q8N2W9 510 aaPredicted RBP31.65■■■□□ 2.66
HLA-F-217ENST00000334668 OSCARQ8IYS5 282 aa31.63■■■□□ 2.65
HLA-F-217ENST00000334668 SNAPC4Q5SXM2 1469 aa31.63■■■□□ 2.65
HLA-F-217ENST00000334668 MAGI1Q96QZ7 1491 aaPredicted RBP31.63■■■□□ 2.65
HLA-F-217ENST00000334668 CHD1O14646 1710 aa31.59■■■□□ 2.65
HLA-F-217ENST00000334668 MSH5O43196 834 aa31.5■■■□□ 2.63
HLA-F-217ENST00000334668 SYNJ2O15056 1496 aa31.5■■■□□ 2.63
HLA-F-217ENST00000334668 ERICH3Q5RHP9 1530 aa31.49■■■□□ 2.63
HLA-F-217ENST00000334668 FBLN2P98095 1184 aa31.44■■■□□ 2.62
HLA-F-217ENST00000334668 CHMP7Q8WUX9 453 aaPredicted RBP31.42■■■□□ 2.62
HLA-F-217ENST00000334668 ADAMTS12P58397 1594 aa31.41■■■□□ 2.62
HLA-F-217ENST00000334668 KIF27Q86VH2 1401 aa31.41■■■□□ 2.62
HLA-F-217ENST00000334668 FHAD1B1AJZ9 1412 aa31.36■■■□□ 2.61
HLA-F-217ENST00000334668 TRIM41Q8WV44 630 aa31.31■■■□□ 2.6
HLA-F-217ENST00000334668 IGF1RP08069 1367 aa31.3■■■□□ 2.6
HLA-F-217ENST00000334668 GRIN2AQ12879 1464 aa31.3■■■□□ 2.6
HLA-F-217ENST00000334668 CLASP1Q7Z460 1538 aa31.27■■■□□ 2.6
HLA-F-217ENST00000334668 CUL7Q14999 1698 aa31.21■■■□□ 2.59
HLA-F-217ENST00000334668 NUP160Q12769 1436 aa31.19■■■□□ 2.58
HLA-F-217ENST00000334668 RUSC2Q8N2Y8 1516 aa31.14■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms