RNA–Protein interactions for RNA: ENST00000489502.5

HLA-F-229, Transcript of major histocompatibility complex, class I, F, humanhuman

Gene HLA-F, Length 489 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-F-229ENST00000489502 NISCHQ9Y2I1 1504 aa34.79■■■■□ 3.16
HLA-F-229ENST00000489502 CCDC180Q9P1Z9 1646 aa30.88■■■□□ 2.53
HLA-F-229ENST00000489502 ABCC9O60706 1549 aa30.04■■■□□ 2.4
HLA-F-229ENST00000489502 ZCCHC6Q5VYS8 1495 aaKnown RBP29.06■■■□□ 2.24
HLA-F-229ENST00000489502 RB1CC1Q8TDY2 1594 aa28.94■■■□□ 2.22
HLA-F-229ENST00000489502 NACADO15069 1562 aa28.93■■■□□ 2.22
HLA-F-229ENST00000489502 DCAF8L2P0C7V8 631 aa28.93■■■□□ 2.22
HLA-F-229ENST00000489502 MYO15BQ96JP2 1530 aa28.78■■■□□ 2.2
HLA-F-229ENST00000489502 DCAF1Q9Y4B6 1507 aa28.76■■■□□ 2.19
HLA-F-229ENST00000489502 UNC13AQ9UPW8 1703 aa28.38■■■□□ 2.13
HLA-F-229ENST00000489502 SCRIBQ14160 1630 aa28.26■■■□□ 2.11
HLA-F-229ENST00000489502 BICRAQ9NZM4 1560 aa28.1■■■□□ 2.09
HLA-F-229ENST00000489502 PABPN1Q86U42 306 aaKnown RBP eCLIP28.05■■■□□ 2.08
HLA-F-229ENST00000489502 SHROOM4Q9ULL8 1493 aa27.74■■■□□ 2.03
HLA-F-229ENST00000489502 EIF4G1Q04637 1599 aaKnown RBP27.33■■□□□ 1.97
HLA-F-229ENST00000489502 DNAJC5BQ9UF47 199 aa27.31■■□□□ 1.96
HLA-F-229ENST00000489502 CC2D2AQ9P2K1 1620 aa27.18■■□□□ 1.94
HLA-F-229ENST00000489502 CECR2Q9BXF3 1484 aa27.12■■□□□ 1.93
HLA-F-229ENST00000489502 SMARCA4P51532 1647 aa27.01■■□□□ 1.91
HLA-F-229ENST00000489502 BAZ1AQ9NRL2 1556 aaPredicted RBP26.96■■□□□ 1.91
HLA-F-229ENST00000489502 MROH2BQ7Z745 1585 aa26.86■■□□□ 1.89
HLA-F-229ENST00000489502 ATAD2BQ9ULI0 1458 aa26.75■■□□□ 1.87
HLA-F-229ENST00000489502 SMARCA2P51531 1590 aa26.73■■□□□ 1.87
HLA-F-229ENST00000489502 PEG3Q9GZU2 1588 aa26.69■■□□□ 1.86
HLA-F-229ENST00000489502 NCAPD3P42695 1498 aa26.66■■□□□ 1.86
HLA-F-229ENST00000489502 HMGXB3Q12766 1538 aa26.62■■□□□ 1.85
HLA-F-229ENST00000489502 WIZO95785 1651 aa26.6■■□□□ 1.85
HLA-F-229ENST00000489502 RSF1Q96T23 1441 aaPredicted RBP26.57■■□□□ 1.84
HLA-F-229ENST00000489502 BAZ1BQ9UIG0 1483 aaKnown RBP26.57■■□□□ 1.84
HLA-F-229ENST00000489502 TOP2AP11388 1531 aaKnown RBP26.31■■□□□ 1.8
HLA-F-229ENST00000489502 NESP48681 1621 aa26.06■■□□□ 1.76
HLA-F-229ENST00000489502 SUPT5HO00267 1087 aaKnown RBP26.05■■□□□ 1.76
HLA-F-229ENST00000489502 LAMC3Q9Y6N6 1575 aa25.98■■□□□ 1.75
HLA-F-229ENST00000489502 CCDC88BA6NC98 1476 aa25.96■■□□□ 1.75
HLA-F-229ENST00000489502 CADPSQ9ULU8 1353 aa25.9■■□□□ 1.74
HLA-F-229ENST00000489502 ERCC6Q03468 1493 aa25.85■■□□□ 1.73
HLA-F-229ENST00000489502 CFTRP13569 1480 aa25.81■■□□□ 1.72
HLA-F-229ENST00000489502 KIF21AQ7Z4S6 1674 aa25.8■■□□□ 1.72
HLA-F-229ENST00000489502 PDS5BQ9NTI5 1447 aa25.74■■□□□ 1.71
HLA-F-229ENST00000489502 PRDM2Q13029 1718 aa25.74■■□□□ 1.71
HLA-F-229ENST00000489502 FANCD2Q9BXW9 1451 aa25.66■■□□□ 1.7
HLA-F-229ENST00000489502 THOC2Q8NI27 1593 aaKnown RBP25.65■■□□□ 1.7
HLA-F-229ENST00000489502 CEP164Q9UPV0 1460 aa25.62■■□□□ 1.69
HLA-F-229ENST00000489502 MRC2Q9UBG0 1479 aa25.54■■□□□ 1.68
HLA-F-229ENST00000489502 WDR62O43379 1518 aa25.47■■□□□ 1.67
HLA-F-229ENST00000489502 CUX2O14529 1486 aa25.47■■□□□ 1.67
HLA-F-229ENST00000489502 URB2Q14146 1524 aaKnown RBP25.42■■□□□ 1.66
HLA-F-229ENST00000489502 TOPBP1Q92547 1522 aa25.29■■□□□ 1.64
HLA-F-229ENST00000489502 DNMBPQ6XZF7 1577 aa25.29■■□□□ 1.64
HLA-F-229ENST00000489502 ABCC8Q09428 1581 aa25.2■■□□□ 1.62
HLA-F-229ENST00000489502 CUX1P39880 1505 aa25.2■■□□□ 1.62
HLA-F-229ENST00000489502 POLA1P09884 1462 aaPredicted RBP25.09■■□□□ 1.61
HLA-F-229ENST00000489502 FGD5Q6ZNL6 1462 aa25.07■■□□□ 1.6
HLA-F-229ENST00000489502 SYNJ1O43426 1573 aa25.06■■□□□ 1.6
HLA-F-229ENST00000489502 WRNQ14191 1432 aaPredicted RBP eCLIP25.06■■□□□ 1.6
HLA-F-229ENST00000489502 IFT140Q96RY7 1462 aa25.04■■□□□ 1.6
HLA-F-229ENST00000489502 BIVM-ERCC5R4GMW8 1640 aa25.03■■□□□ 1.6
HLA-F-229ENST00000489502 TOP2BQ02880 1626 aa25.01■■□□□ 1.59
HLA-F-229ENST00000489502 TARBP1Q13395 1621 aaKnown RBP25.01■■□□□ 1.59
HLA-F-229ENST00000489502 RAD54L2Q9Y4B4 1467 aa24.98■■□□□ 1.59
HLA-F-229ENST00000489502 ZNF608Q9ULD9 1512 aaPredicted RBP24.96■■□□□ 1.59
HLA-F-229ENST00000489502 SOGA1O94964 1423 aa24.93■■□□□ 1.58
HLA-F-229ENST00000489502 EIF4G3O43432 1585 aaKnown RBP24.92■■□□□ 1.58
HLA-F-229ENST00000489502 WDR97A6NE52 1622 aa24.91■■□□□ 1.58
HLA-F-229ENST00000489502 AQRO60306 1485 aaKnown RBP eCLIP24.82■■□□□ 1.56
HLA-F-229ENST00000489502 ABCA10Q8WWZ4 1543 aa24.8■■□□□ 1.56
HLA-F-229ENST00000489502 TDRD9Q8NDG6 1382 aaKnown RBP24.79■■□□□ 1.56
HLA-F-229ENST00000489502 ABCA5Q8WWZ7 1642 aa24.75■■□□□ 1.55
HLA-F-229ENST00000489502 PBRM1Q86U86 1689 aa24.7■■□□□ 1.54
HLA-F-229ENST00000489502 GAPVD1Q14C86 1478 aa24.68■■□□□ 1.54
HLA-F-229ENST00000489502 GRIN2BQ13224 1484 aa24.64■■□□□ 1.53
HLA-F-229ENST00000489502 SNAPC4Q5SXM2 1469 aa24.64■■□□□ 1.53
HLA-F-229ENST00000489502 CHD1O14646 1710 aa24.58■■□□□ 1.52
HLA-F-229ENST00000489502 MAGI1Q96QZ7 1491 aaPredicted RBP24.56■■□□□ 1.52
HLA-F-229ENST00000489502 TRIM41Q8WV44 630 aa24.54■■□□□ 1.52
HLA-F-229ENST00000489502 ADAMTS12P58397 1594 aa24.51■■□□□ 1.51
HLA-F-229ENST00000489502 KIF27Q86VH2 1401 aa24.5■■□□□ 1.51
HLA-F-229ENST00000489502 ERICH3Q5RHP9 1530 aa24.5■■□□□ 1.51
HLA-F-229ENST00000489502 SYNJ2O15056 1496 aa24.46■■□□□ 1.51
HLA-F-229ENST00000489502 FBLN2P98095 1184 aa24.44■■□□□ 1.5
HLA-F-229ENST00000489502 CHIC1Q5VXU3 224 aa24.4■■□□□ 1.5
HLA-F-229ENST00000489502 RUSC2Q8N2Y8 1516 aa24.4■■□□□ 1.5
HLA-F-229ENST00000489502 FHAD1B1AJZ9 1412 aa24.38■■□□□ 1.49
HLA-F-229ENST00000489502 CHMP7Q8WUX9 453 aaPredicted RBP24.37■■□□□ 1.49
HLA-F-229ENST00000489502 DNAJC5Q9H3Z4 198 aa24.37■■□□□ 1.49
HLA-F-229ENST00000489502 OSCARQ8IYS5 282 aa24.36■■□□□ 1.49
HLA-F-229ENST00000489502 CUL7Q14999 1698 aa24.35■■□□□ 1.49
HLA-F-229ENST00000489502 GRIN2AQ12879 1464 aa24.35■■□□□ 1.49
HLA-F-229ENST00000489502 IGF1RP08069 1367 aa24.34■■□□□ 1.49
HLA-F-229ENST00000489502 CLASP1Q7Z460 1538 aa24.26■■□□□ 1.47
HLA-F-229ENST00000489502 CEP170Q5SW79 1584 aa24.26■■□□□ 1.47
HLA-F-229ENST00000489502 NUP160Q12769 1436 aa24.22■■□□□ 1.47
HLA-F-229ENST00000489502 CARMIL1Q5VZK9 1371 aa24.21■■□□□ 1.47
HLA-F-229ENST00000489502 EEA1Q15075 1411 aa24.13■■□□□ 1.45
HLA-F-229ENST00000489502 RAPGEF2Q9Y4G8 1499 aa24.12■■□□□ 1.45
HLA-F-229ENST00000489502 ARHGEF11O15085 1522 aa24.11■■□□□ 1.45
HLA-F-229ENST00000489502 RIMBP3CA6NJZ7 1639 aa24.1■■□□□ 1.45
HLA-F-229ENST00000489502 RIMBP3BA6NNM3 1639 aa24.1■■□□□ 1.45
HLA-F-229ENST00000489502 RIMBP3Q9UFD9 1639 aa24.1■■□□□ 1.45
HLA-F-229ENST00000489502 FAM9AQ8IZU1 332 aaPredicted RBP24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms