RNA–Protein interactions for RNA: ENST00000359060.5

SSU72-202, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2 BASIC

Gene SSU72, Length 4,176 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-202ENST00000359060 NISCHQ9Y2I1 1504 aa22.09■■□□□ 1.13
SSU72-202ENST00000359060 DCAF8L2P0C7V8 631 aa19.85■□□□□ 0.77
SSU72-202ENST00000359060 SHROOM4Q9ULL8 1493 aa19.7■□□□□ 0.74
SSU72-202ENST00000359060 SUPT5HO00267 1087 aaKnown RBP19.49■□□□□ 0.71
SSU72-202ENST00000359060 ZCCHC6Q5VYS8 1495 aaKnown RBP18.52■□□□□ 0.56
SSU72-202ENST00000359060 CCDC180Q9P1Z9 1646 aa18.46■□□□□ 0.55
SSU72-202ENST00000359060 CHIC1Q5VXU3 224 aa18.34■□□□□ 0.53
SSU72-202ENST00000359060 EHMT2Q96KQ7 1210 aa18.26■□□□□ 0.51
SSU72-202ENST00000359060 FAM9AQ8IZU1 332 aaPredicted RBP18.16■□□□□ 0.5
SSU72-202ENST00000359060 PCGF6Q9BYE7 350 aa18.13■□□□□ 0.49
SSU72-202ENST00000359060 ABCC9O60706 1549 aa18.09■□□□□ 0.49
SSU72-202ENST00000359060 TRIM41Q8WV44 630 aa18.04■□□□□ 0.48
SSU72-202ENST00000359060 LOC105371045A0A1W2PR82 267 aa18.03■□□□□ 0.48
SSU72-202ENST00000359060 SCRIBQ14160 1630 aa17.86■□□□□ 0.45
SSU72-202ENST00000359060 DCAF1Q9Y4B6 1507 aa17.79■□□□□ 0.44
SSU72-202ENST00000359060 MYO15BQ96JP2 1530 aa17.78■□□□□ 0.44
SSU72-202ENST00000359060 HRCP23327 699 aa17.68■□□□□ 0.42
SSU72-202ENST00000359060 TTBK1Q5TCY1 1321 aaPredicted RBP17.61■□□□□ 0.41
SSU72-202ENST00000359060 PPARGC1BQ86YN6 1023 aaKnown RBP17.59■□□□□ 0.41
SSU72-202ENST00000359060 RSF1Q96T23 1441 aaPredicted RBP17.58■□□□□ 0.4
SSU72-202ENST00000359060 PABPN1Q86U42 306 aaKnown RBP eCLIP17.57■□□□□ 0.4
SSU72-202ENST00000359060 TRIM26Q12899 539 aaPredicted RBP17.57■□□□□ 0.4
SSU72-202ENST00000359060 UBTFP17480 764 aaKnown RBP17.42■□□□□ 0.38
SSU72-202ENST00000359060 NACADO15069 1562 aa17.41■□□□□ 0.38
SSU72-202ENST00000359060 CECR2Q9BXF3 1484 aa17.39■□□□□ 0.37
SSU72-202ENST00000359060 RANGAP1P46060 587 aaPredicted RBP17.38■□□□□ 0.37
SSU72-202ENST00000359060 RB1CC1Q8TDY2 1594 aa17.28■□□□□ 0.36
SSU72-202ENST00000359060 ZEB1P37275 1124 aaPredicted RBP17.28■□□□□ 0.36
SSU72-202ENST00000359060 CCER1Q8TC90 406 aaPredicted RBP17.25■□□□□ 0.35
SSU72-202ENST00000359060 APLP2Q06481 763 aa17.23■□□□□ 0.35
SSU72-202ENST00000359060 MROH2BQ7Z745 1585 aa17.22■□□□□ 0.35
SSU72-202ENST00000359060 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.08■□□□□ 0.32
SSU72-202ENST00000359060 BAZ1AQ9NRL2 1556 aaPredicted RBP17.06■□□□□ 0.32
SSU72-202ENST00000359060 WIZO95785 1651 aa17.06■□□□□ 0.32
SSU72-202ENST00000359060 CSRNP3Q8WYN3 585 aa17.03■□□□□ 0.32
SSU72-202ENST00000359060 HNRNPUL2Q1KMD3 747 aaKnown RBP16.93■□□□□ 0.3
SSU72-202ENST00000359060 CCDC88BA6NC98 1476 aa16.88■□□□□ 0.29
SSU72-202ENST00000359060 ABCC8Q09428 1581 aa16.85■□□□□ 0.29
SSU72-202ENST00000359060 ATP1B4Q9UN42 357 aaPredicted RBP16.84■□□□□ 0.29
SSU72-202ENST00000359060 SOGA1O94964 1423 aa16.79■□□□□ 0.28
SSU72-202ENST00000359060 TOP2AP11388 1531 aaKnown RBP16.77■□□□□ 0.28
SSU72-202ENST00000359060 SMARCA4P51532 1647 aa16.77■□□□□ 0.27
SSU72-202ENST00000359060 WRNQ14191 1432 aaPredicted RBP eCLIP16.76■□□□□ 0.27
SSU72-202ENST00000359060 CEP162Q5TB80 1403 aa16.74■□□□□ 0.27
SSU72-202ENST00000359060 BAZ1BQ9UIG0 1483 aaKnown RBP16.73■□□□□ 0.27
SSU72-202ENST00000359060 ITGAEP38570 1179 aa16.72■□□□□ 0.27
SSU72-202ENST00000359060 EEA1Q15075 1411 aa16.66■□□□□ 0.26
SSU72-202ENST00000359060 TNIKQ9UKE5 1360 aa16.65■□□□□ 0.26
SSU72-202ENST00000359060 GOLGA3Q08378 1498 aa16.62■□□□□ 0.25
SSU72-202ENST00000359060 DIEXFQ68CQ4 756 aaKnown RBP16.62■□□□□ 0.25
SSU72-202ENST00000359060 SMARCA2P51531 1590 aa16.62■□□□□ 0.25
SSU72-202ENST00000359060 YTHDC1Q96MU7 727 aaKnown RBP16.61■□□□□ 0.25
SSU72-202ENST00000359060 CENPBP07199 599 aaPredicted RBP16.6■□□□□ 0.25
SSU72-202ENST00000359060 RUSC2Q8N2Y8 1516 aa16.6■□□□□ 0.25
SSU72-202ENST00000359060 CLIP1P30622 1438 aa16.59■□□□□ 0.25
SSU72-202ENST00000359060 ATAD2BQ9ULI0 1458 aa16.55■□□□□ 0.24
SSU72-202ENST00000359060 CEP164Q9UPV0 1460 aa16.51■□□□□ 0.23
SSU72-202ENST00000359060 P3H3Q8IVL6 736 aa16.5■□□□□ 0.23
SSU72-202ENST00000359060 ZNF316A6NFI3 1004 aaPredicted RBP16.42■□□□□ 0.22
SSU72-202ENST00000359060 BICRAQ9NZM4 1560 aa16.42■□□□□ 0.22
SSU72-202ENST00000359060 FAM50AQ14320 339 aaKnown RBP16.41■□□□□ 0.22
SSU72-202ENST00000359060 UNC13AQ9UPW8 1703 aa16.41■□□□□ 0.22
SSU72-202ENST00000359060 KIF27Q86VH2 1401 aa16.35■□□□□ 0.21
SSU72-202ENST00000359060 RAPGEF2Q9Y4G8 1499 aa16.34■□□□□ 0.21
SSU72-202ENST00000359060 VPS8Q8N3P4 1428 aa16.3■□□□□ 0.2
SSU72-202ENST00000359060 SYNJ1O43426 1573 aa16.28■□□□□ 0.2
SSU72-202ENST00000359060 NEUROD1Q13562 356 aa16.26■□□□□ 0.19
SSU72-202ENST00000359060 ACIN1Q9UKV3 1341 aaKnown RBP16.24■□□□□ 0.19
SSU72-202ENST00000359060 KANK4Q5T7N3 995 aaPredicted RBP16.23■□□□□ 0.19
SSU72-202ENST00000359060 GTF3C3Q9Y5Q9 886 aa16.23■□□□□ 0.19
SSU72-202ENST00000359060 EIF4G1Q04637 1599 aaKnown RBP16.23■□□□□ 0.19
SSU72-202ENST00000359060 CUX2O14529 1486 aa16.23■□□□□ 0.19
SSU72-202ENST00000359060 SCAF1Q9H7N4 1312 aaKnown RBP16.19■□□□□ 0.18
SSU72-202ENST00000359060 ARID3CA6NKF2 412 aa16.18■□□□□ 0.18
SSU72-202ENST00000359060 NCAPD3P42695 1498 aa16.17■□□□□ 0.18
SSU72-202ENST00000359060 CARMIL1Q5VZK9 1371 aa16.15■□□□□ 0.18
SSU72-202ENST00000359060 CADPSQ9ULU8 1353 aa16.14■□□□□ 0.17
SSU72-202ENST00000359060 MIER1Q8N108 512 aa16.13■□□□□ 0.17
SSU72-202ENST00000359060 PEG3Q9GZU2 1588 aa16.13■□□□□ 0.17
SSU72-202ENST00000359060 KIF21BO75037 1637 aa16.07■□□□□ 0.16
SSU72-202ENST00000359060 PELP1Q8IZL8 1130 aaKnown RBP16.05■□□□□ 0.16
SSU72-202ENST00000359060 CCNB3Q8WWL7 1395 aa16.04■□□□□ 0.16
SSU72-202ENST00000359060 TRIM52Q96A61 297 aa16.04■□□□□ 0.16
SSU72-202ENST00000359060 FBLN2P98095 1184 aa16.04■□□□□ 0.16
SSU72-202ENST00000359060 TOP2BQ02880 1626 aa16.03■□□□□ 0.16
SSU72-202ENST00000359060 CFTRP13569 1480 aa16.02■□□□□ 0.15
SSU72-202ENST00000359060 CUX1P39880 1505 aa16■□□□□ 0.15
SSU72-202ENST00000359060 IGF1RP08069 1367 aa16■□□□□ 0.15
SSU72-202ENST00000359060 MTUS2Q5JR59 1369 aa16■□□□□ 0.15
SSU72-202ENST00000359060 HMGXB3Q12766 1538 aa15.99■□□□□ 0.15
SSU72-202ENST00000359060 TDRD9Q8NDG6 1382 aaKnown RBP15.97■□□□□ 0.15
SSU72-202ENST00000359060 PRXQ9BXM0 1461 aa15.97■□□□□ 0.15
SSU72-202ENST00000359060 FGD5Q6ZNL6 1462 aa15.96■□□□□ 0.15
SSU72-202ENST00000359060 FANCD2Q9BXW9 1451 aa15.96■□□□□ 0.15
SSU72-202ENST00000359060 CHIC2Q9UKJ5 165 aa15.96■□□□□ 0.14
SSU72-202ENST00000359060 ARAP1Q96P48 1450 aa15.94■□□□□ 0.14
SSU72-202ENST00000359060 HIRIP3Q9BW71 556 aaPredicted RBP15.93■□□□□ 0.14
SSU72-202ENST00000359060 SIN3AQ96ST3 1273 aa15.93■□□□□ 0.14
SSU72-202ENST00000359060 FHAD1B1AJZ9 1412 aa15.92■□□□□ 0.14
SSU72-202ENST00000359060 DDX10Q13206 875 aaKnown RBP15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms