RNA–Protein interactions for RNA: ENST00000606273.3

HLA-F-230, Transcript of major histocompatibility complex, class I, F, humanhuman

Gene HLA-F, Length 579 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-F-230ENST00000606273 AEBP2Q6ZN18 517 aaPredicted RBP42.61■■■■■ 4.41
HLA-F-230ENST00000606273 CHIC1Q5VXU3 224 aa40.68■■■■■ 4.1
HLA-F-230ENST00000606273 SENP3Q9H4L4 574 aaPredicted RBP36.27■■■■□ 3.4
HLA-F-230ENST00000606273 PHF23Q9BUL5 403 aaPredicted RBP35.87■■■■□ 3.33
HLA-F-230ENST00000606273 FOXD1Q16676 465 aa33.81■■■■□ 3
HLA-F-230ENST00000606273 PLPPR3Q6T4P5 718 aa32.61■■■□□ 2.81
HLA-F-230ENST00000606273 PPP6R1Q9UPN7 881 aa31.83■■■□□ 2.69
HLA-F-230ENST00000606273 ADRA2BP18089 450 aa31.74■■■□□ 2.67
HLA-F-230ENST00000606273 PIAS4Q8N2W9 510 aaPredicted RBP31.65■■■□□ 2.66
HLA-F-230ENST00000606273 MSH5O43196 834 aa31.5■■■□□ 2.63
HLA-F-230ENST00000606273 NISCHQ9Y2I1 1504 aa30.91■■■□□ 2.54
HLA-F-230ENST00000606273 POTEDQ86YR6 584 aa30.35■■■□□ 2.45
HLA-F-230ENST00000606273 MAPK8IP2Q13387 824 aaPredicted RBP29.09■■■□□ 2.25
HLA-F-230ENST00000606273 SCAF1Q9H7N4 1312 aaKnown RBP28.99■■■□□ 2.23
HLA-F-230ENST00000606273 ABCC9O60706 1549 aa28.84■■■□□ 2.21
HLA-F-230ENST00000606273 DMRT2Q9Y5R5 561 aa28.81■■■□□ 2.2
HLA-F-230ENST00000606273 PPP4R3CPQ6ZMV5 832 aa28.65■■■□□ 2.18
HLA-F-230ENST00000606273 CNKSR2Q8WXI2 1034 aa28.03■■■□□ 2.08
HLA-F-230ENST00000606273 DNAJC5BQ9UF47 199 aa27.92■■■□□ 2.06
HLA-F-230ENST00000606273 CCDC180Q9P1Z9 1646 aa27.91■■■□□ 2.06
HLA-F-230ENST00000606273 HOXD11P31277 338 aaPredicted RBP27.85■■■□□ 2.05
HLA-F-230ENST00000606273 RNF216Q9NWF9 866 aaPredicted RBP27.71■■■□□ 2.03
HLA-F-230ENST00000606273 DCAF8L1A6NGE4 600 aa27.65■■■□□ 2.02
HLA-F-230ENST00000606273 NCBP3Q53F19 620 aaKnown RBP27.6■■■□□ 2.01
HLA-F-230ENST00000606273 NPM3O75607 178 aaKnown RBP27.21■■□□□ 1.95
HLA-F-230ENST00000606273 RB1CC1Q8TDY2 1594 aa27.03■■□□□ 1.92
HLA-F-230ENST00000606273 KCNA4P22459 653 aa26.93■■□□□ 1.9
HLA-F-230ENST00000606273 CACNB1Q02641 598 aaPredicted RBP26.92■■□□□ 1.9
HLA-F-230ENST00000606273 RNF39Q9H2S5 420 aa26.92■■□□□ 1.9
HLA-F-230ENST00000606273 PABPN1Q86U42 306 aaKnown RBP eCLIP26.85■■□□□ 1.89
HLA-F-230ENST00000606273 NACADO15069 1562 aa26.69■■□□□ 1.86
HLA-F-230ENST00000606273 DCAF8L2P0C7V8 631 aa26.58■■□□□ 1.85
HLA-F-230ENST00000606273 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.56■■□□□ 1.84
HLA-F-230ENST00000606273 C1QBPQ07021 282 aaKnown RBP26.53■■□□□ 1.84
HLA-F-230ENST00000606273 BICRAQ9NZM4 1560 aa26.31■■□□□ 1.8
HLA-F-230ENST00000606273 UNC13AQ9UPW8 1703 aa26.28■■□□□ 1.8
HLA-F-230ENST00000606273 DNAJC5Q9H3Z4 198 aa26.18■■□□□ 1.78
HLA-F-230ENST00000606273 MYO15BQ96JP2 1530 aa26.09■■□□□ 1.77
HLA-F-230ENST00000606273 CECR2Q9BXF3 1484 aa26.07■■□□□ 1.76
HLA-F-230ENST00000606273 U3KPZ7 1027 aaPredicted RBP26.02■■□□□ 1.76
HLA-F-230ENST00000606273 CC2D2AQ9P2K1 1620 aa25.96■■□□□ 1.75
HLA-F-230ENST00000606273 SLC4A2P04920 1241 aa25.94■■□□□ 1.74
HLA-F-230ENST00000606273 SHROOM4Q9ULL8 1493 aa25.84■■□□□ 1.73
HLA-F-230ENST00000606273 EIF4G1Q04637 1599 aaKnown RBP25.72■■□□□ 1.71
HLA-F-230ENST00000606273 SPINK5Q9NQ38 1064 aaPredicted RBP25.59■■□□□ 1.69
HLA-F-230ENST00000606273 CAPN15O75808 1086 aa25.52■■□□□ 1.68
HLA-F-230ENST00000606273 SLC4A1APQ9BWU0 796 aaKnown RBP25.47■■□□□ 1.67
HLA-F-230ENST00000606273 DCAF1Q9Y4B6 1507 aa25.46■■□□□ 1.67
HLA-F-230ENST00000606273 SCRIBQ14160 1630 aa25.44■■□□□ 1.66
HLA-F-230ENST00000606273 ZCCHC6Q5VYS8 1495 aaKnown RBP25.41■■□□□ 1.66
HLA-F-230ENST00000606273 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.33■■□□□ 1.65
HLA-F-230ENST00000606273 HNRNPUL2Q1KMD3 747 aaKnown RBP25.33■■□□□ 1.65
HLA-F-230ENST00000606273 DSG3P32926 999 aa25.31■■□□□ 1.64
HLA-F-230ENST00000606273 APLP2Q06481 763 aa25.28■■□□□ 1.64
HLA-F-230ENST00000606273 SAMD1Q6SPF0 538 aaPredicted RBP25.22■■□□□ 1.63
HLA-F-230ENST00000606273 TRHP20396 242 aaPredicted RBP25.19■■□□□ 1.62
HLA-F-230ENST00000606273 MYCNP04198 464 aaPredicted RBP25.15■■□□□ 1.62
HLA-F-230ENST00000606273 CUX2O14529 1486 aa25.14■■□□□ 1.61
HLA-F-230ENST00000606273 ZNF219Q9P2Y4 722 aaPredicted RBP25.1■■□□□ 1.61
HLA-F-230ENST00000606273 FOXD4L1Q9NU39 408 aa25.03■■□□□ 1.6
HLA-F-230ENST00000606273 ABCB7O75027 752 aa24.97■■□□□ 1.59
HLA-F-230ENST00000606273 ERCC6Q03468 1493 aa24.92■■□□□ 1.58
HLA-F-230ENST00000606273 ZBTB22O15209 634 aa24.77■■□□□ 1.56
HLA-F-230ENST00000606273 NCAPD3P42695 1498 aa24.74■■□□□ 1.55
HLA-F-230ENST00000606273 TRIM41Q8WV44 630 aa24.67■■□□□ 1.54
HLA-F-230ENST00000606273 ATF5Q9Y2D1 282 aaPredicted RBP24.59■■□□□ 1.53
HLA-F-230ENST00000606273 POLA2Q14181 598 aa24.56■■□□□ 1.52
HLA-F-230ENST00000606273 NESP48681 1621 aa24.56■■□□□ 1.52
HLA-F-230ENST00000606273 ATAD2BQ9ULI0 1458 aa24.53■■□□□ 1.52
HLA-F-230ENST00000606273 HMGXB3Q12766 1538 aa24.35■■□□□ 1.49
HLA-F-230ENST00000606273 THOC2Q8NI27 1593 aaKnown RBP24.35■■□□□ 1.49
HLA-F-230ENST00000606273 SMARCA2P51531 1590 aa24.33■■□□□ 1.49
HLA-F-230ENST00000606273 ATXN8OSP0DMR3 200 aa24.22■■□□□ 1.47
HLA-F-230ENST00000606273 SMARCA4P51532 1647 aa24.2■■□□□ 1.46
HLA-F-230ENST00000606273 BAZ1BQ9UIG0 1483 aaKnown RBP24.19■■□□□ 1.46
HLA-F-230ENST00000606273 LAMC3Q9Y6N6 1575 aa24.19■■□□□ 1.46
HLA-F-230ENST00000606273 PDS5BQ9NTI5 1447 aa24.17■■□□□ 1.46
HLA-F-230ENST00000606273 RBM42Q9BTD8 480 aaKnown RBP24.11■■□□□ 1.45
HLA-F-230ENST00000606273 KIF21AQ7Z4S6 1674 aa24.05■■□□□ 1.44
HLA-F-230ENST00000606273 ZBTB12Q9Y330 459 aaPredicted RBP24.04■■□□□ 1.44
HLA-F-230ENST00000606273 OSCARQ8IYS5 282 aa24.02■■□□□ 1.44
HLA-F-230ENST00000606273 BAZ1AQ9NRL2 1556 aaPredicted RBP24■■□□□ 1.43
HLA-F-230ENST00000606273 PEG3Q9GZU2 1588 aa23.99■■□□□ 1.43
HLA-F-230ENST00000606273 CADPSQ9ULU8 1353 aa23.97■■□□□ 1.43
HLA-F-230ENST00000606273 MRC2Q9UBG0 1479 aa23.95■■□□□ 1.42
HLA-F-230ENST00000606273 WDR62O43379 1518 aa23.89■■□□□ 1.42
HLA-F-230ENST00000606273 CSRNP3Q8WYN3 585 aa23.85■■□□□ 1.41
HLA-F-230ENST00000606273 POTEHQ6S545 545 aa23.83■■□□□ 1.41
HLA-F-230ENST00000606273 MROH2BQ7Z745 1585 aa23.82■■□□□ 1.4
HLA-F-230ENST00000606273 EHMT2Q96KQ7 1210 aa23.7■■□□□ 1.38
HLA-F-230ENST00000606273 CEP164Q9UPV0 1460 aa23.69■■□□□ 1.38
HLA-F-230ENST00000606273 FANCD2Q9BXW9 1451 aa23.63■■□□□ 1.37
HLA-F-230ENST00000606273 AKT1S1Q96B36 256 aa23.63■■□□□ 1.37
HLA-F-230ENST00000606273 RIMBP3CA6NJZ7 1639 aa23.59■■□□□ 1.37
HLA-F-230ENST00000606273 RIMBP3BA6NNM3 1639 aa23.59■■□□□ 1.37
HLA-F-230ENST00000606273 RIMBP3Q9UFD9 1639 aa23.59■■□□□ 1.37
HLA-F-230ENST00000606273 FBLN2P98095 1184 aa23.58■■□□□ 1.37
HLA-F-230ENST00000606273 CYB5RLQ6IPT4 315 aa23.51■■□□□ 1.35
HLA-F-230ENST00000606273 CHRDL2Q6WN34 429 aa23.51■■□□□ 1.35
HLA-F-230ENST00000606273 CFTRP13569 1480 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms