RNA–Protein interactions for RNA: ENST00000529210.1

COPB1-206, Transcript of coatomer protein complex subunit beta 1, humanhuman

TSL 4

Gene COPB1, Length 607 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-206ENST00000529210 NISCHQ9Y2I1 1504 aa29.95■■■□□ 2.38
COPB1-206ENST00000529210 CCDC180Q9P1Z9 1646 aa26.8■■□□□ 1.88
COPB1-206ENST00000529210 ABCC9O60706 1549 aa26.33■■□□□ 1.81
COPB1-206ENST00000529210 RB1CC1Q8TDY2 1594 aa25.31■■□□□ 1.64
COPB1-206ENST00000529210 NACADO15069 1562 aa25.24■■□□□ 1.63
COPB1-206ENST00000529210 MYO15BQ96JP2 1530 aa25.09■■□□□ 1.61
COPB1-206ENST00000529210 ZCCHC6Q5VYS8 1495 aaKnown RBP24.91■■□□□ 1.58
COPB1-206ENST00000529210 DCAF8L2P0C7V8 631 aa24.9■■□□□ 1.58
COPB1-206ENST00000529210 DCAF1Q9Y4B6 1507 aa24.86■■□□□ 1.57
COPB1-206ENST00000529210 UNC13AQ9UPW8 1703 aa24.72■■□□□ 1.55
COPB1-206ENST00000529210 BICRAQ9NZM4 1560 aa24.56■■□□□ 1.52
COPB1-206ENST00000529210 PABPN1Q86U42 306 aaKnown RBP eCLIP24.5■■□□□ 1.51
COPB1-206ENST00000529210 DNAJC5BQ9UF47 199 aa24.42■■□□□ 1.5
COPB1-206ENST00000529210 SHROOM4Q9ULL8 1493 aa24.38■■□□□ 1.49
COPB1-206ENST00000529210 SCRIBQ14160 1630 aa24.29■■□□□ 1.48
COPB1-206ENST00000529210 EIF4G1Q04637 1599 aaKnown RBP23.91■■□□□ 1.42
COPB1-206ENST00000529210 CC2D2AQ9P2K1 1620 aa23.86■■□□□ 1.41
COPB1-206ENST00000529210 CECR2Q9BXF3 1484 aa23.73■■□□□ 1.39
COPB1-206ENST00000529210 AEBP2Q6ZN18 517 aaPredicted RBP23.42■■□□□ 1.34
COPB1-206ENST00000529210 NCAPD3P42695 1498 aa23.3■■□□□ 1.32
COPB1-206ENST00000529210 SMARCA4P51532 1647 aa23.29■■□□□ 1.32
COPB1-206ENST00000529210 BAZ1AQ9NRL2 1556 aaPredicted RBP23.23■■□□□ 1.31
COPB1-206ENST00000529210 ATAD2BQ9ULI0 1458 aa23.23■■□□□ 1.31
COPB1-206ENST00000529210 SMARCA2P51531 1590 aa23.21■■□□□ 1.31
COPB1-206ENST00000529210 HMGXB3Q12766 1538 aa23.17■■□□□ 1.3
COPB1-206ENST00000529210 PEG3Q9GZU2 1588 aa23.15■■□□□ 1.3
COPB1-206ENST00000529210 MROH2BQ7Z745 1585 aa23.03■■□□□ 1.28
COPB1-206ENST00000529210 BAZ1BQ9UIG0 1483 aaKnown RBP22.99■■□□□ 1.27
COPB1-206ENST00000529210 WIZO95785 1651 aa22.76■■□□□ 1.23
COPB1-206ENST00000529210 ERCC6Q03468 1493 aa22.72■■□□□ 1.23
COPB1-206ENST00000529210 LAMC3Q9Y6N6 1575 aa22.72■■□□□ 1.23
COPB1-206ENST00000529210 NESP48681 1621 aa22.71■■□□□ 1.23
COPB1-206ENST00000529210 RSF1Q96T23 1441 aaPredicted RBP22.69■■□□□ 1.22
COPB1-206ENST00000529210 CUX2O14529 1486 aa22.68■■□□□ 1.22
COPB1-206ENST00000529210 CADPSQ9ULU8 1353 aa22.56■■□□□ 1.2
COPB1-206ENST00000529210 TOP2AP11388 1531 aaKnown RBP22.55■■□□□ 1.2
COPB1-206ENST00000529210 PDS5BQ9NTI5 1447 aa22.54■■□□□ 1.2
COPB1-206ENST00000529210 THOC2Q8NI27 1593 aaKnown RBP22.51■■□□□ 1.19
COPB1-206ENST00000529210 KIF21AQ7Z4S6 1674 aa22.48■■□□□ 1.19
COPB1-206ENST00000529210 CHIC1Q5VXU3 224 aa22.47■■□□□ 1.19
COPB1-206ENST00000529210 CFTRP13569 1480 aa22.4■■□□□ 1.18
COPB1-206ENST00000529210 MRC2Q9UBG0 1479 aa22.31■■□□□ 1.16
COPB1-206ENST00000529210 WDR62O43379 1518 aa22.29■■□□□ 1.16
COPB1-206ENST00000529210 FANCD2Q9BXW9 1451 aa22.28■■□□□ 1.16
COPB1-206ENST00000529210 CEP164Q9UPV0 1460 aa22.28■■□□□ 1.16
COPB1-206ENST00000529210 DNAJC5Q9H3Z4 198 aa22.26■■□□□ 1.15
COPB1-206ENST00000529210 CCDC88BA6NC98 1476 aa22.25■■□□□ 1.15
COPB1-206ENST00000529210 PRDM2Q13029 1718 aa22.22■■□□□ 1.15
COPB1-206ENST00000529210 URB2Q14146 1524 aaKnown RBP22.08■■□□□ 1.13
COPB1-206ENST00000529210 ABCC8Q09428 1581 aa21.94■■□□□ 1.1
COPB1-206ENST00000529210 TOPBP1Q92547 1522 aa21.9■■□□□ 1.1
COPB1-206ENST00000529210 DNMBPQ6XZF7 1577 aa21.87■■□□□ 1.09
COPB1-206ENST00000529210 IFT140Q96RY7 1462 aa21.85■■□□□ 1.09
COPB1-206ENST00000529210 SUPT5HO00267 1087 aaKnown RBP21.74■■□□□ 1.07
COPB1-206ENST00000529210 ZNF608Q9ULD9 1512 aaPredicted RBP21.72■■□□□ 1.07
COPB1-206ENST00000529210 TARBP1Q13395 1621 aaKnown RBP21.72■■□□□ 1.07
COPB1-206ENST00000529210 POLA1P09884 1462 aaPredicted RBP21.71■■□□□ 1.07
COPB1-206ENST00000529210 EIF4G3O43432 1585 aaKnown RBP21.65■■□□□ 1.06
COPB1-206ENST00000529210 CUX1P39880 1505 aa21.63■■□□□ 1.05
COPB1-206ENST00000529210 OSCARQ8IYS5 282 aa21.62■■□□□ 1.05
COPB1-206ENST00000529210 WDR97A6NE52 1622 aa21.6■■□□□ 1.05
COPB1-206ENST00000529210 FGD5Q6ZNL6 1462 aa21.59■■□□□ 1.05
COPB1-206ENST00000529210 SOGA1O94964 1423 aa21.58■■□□□ 1.05
COPB1-206ENST00000529210 RAD54L2Q9Y4B4 1467 aa21.56■■□□□ 1.04
COPB1-206ENST00000529210 AQRO60306 1485 aaKnown RBP eCLIP21.55■■□□□ 1.045e-9■■■■□ 26.6
COPB1-206ENST00000529210 TDRD9Q8NDG6 1382 aaKnown RBP21.46■■□□□ 1.03
COPB1-206ENST00000529210 CHD1O14646 1710 aa21.42■■□□□ 1.02
COPB1-206ENST00000529210 ABCA10Q8WWZ4 1543 aa21.42■■□□□ 1.02
COPB1-206ENST00000529210 BIVM-ERCC5R4GMW8 1640 aa21.42■■□□□ 1.02
COPB1-206ENST00000529210 TOP2BQ02880 1626 aa21.4■■□□□ 1.02
COPB1-206ENST00000529210 GRIN2BQ13224 1484 aa21.39■■□□□ 1.02
COPB1-206ENST00000529210 MAGI1Q96QZ7 1491 aaPredicted RBP21.39■■□□□ 1.01
COPB1-206ENST00000529210 WRNQ14191 1432 aaPredicted RBP eCLIP21.38■■□□□ 1.01
COPB1-206ENST00000529210 SNAPC4Q5SXM2 1469 aa21.36■■□□□ 1.01
COPB1-206ENST00000529210 ABCA5Q8WWZ7 1642 aa21.36■■□□□ 1.01
COPB1-206ENST00000529210 SYNJ1O43426 1573 aa21.35■■□□□ 1.01
COPB1-206ENST00000529210 GAPVD1Q14C86 1478 aa21.34■■□□□ 1.01
COPB1-206ENST00000529210 PBRM1Q86U86 1689 aa21.32■■□□□ 1
COPB1-206ENST00000529210 RIMBP3CA6NJZ7 1639 aa21.32■■□□□ 1
COPB1-206ENST00000529210 RIMBP3BA6NNM3 1639 aa21.32■■□□□ 1
COPB1-206ENST00000529210 RIMBP3Q9UFD9 1639 aa21.32■■□□□ 1
COPB1-206ENST00000529210 ARHGEF11O15085 1522 aa21.29■■□□□ 1
COPB1-206ENST00000529210 SYNJ2O15056 1496 aa21.29■■□□□ 1
COPB1-206ENST00000529210 FBLN2P98095 1184 aa21.25■□□□□ 0.99
COPB1-206ENST00000529210 TRIM41Q8WV44 630 aa21.25■□□□□ 0.99
COPB1-206ENST00000529210 CLASP1Q7Z460 1538 aa21.24■□□□□ 0.99
COPB1-206ENST00000529210 CHMP7Q8WUX9 453 aaPredicted RBP21.22■□□□□ 0.99
COPB1-206ENST00000529210 ERICH3Q5RHP9 1530 aa21.17■□□□□ 0.98
COPB1-206ENST00000529210 ADAMTS12P58397 1594 aa21.15■□□□□ 0.98
COPB1-206ENST00000529210 GRIN2AQ12879 1464 aa21.11■□□□□ 0.97
COPB1-206ENST00000529210 ARAP1Q96P48 1450 aa21.11■□□□□ 0.97
COPB1-206ENST00000529210 FHAD1B1AJZ9 1412 aa21.11■□□□□ 0.97
COPB1-206ENST00000529210 NUP160Q12769 1436 aa21.07■□□□□ 0.96
COPB1-206ENST00000529210 CYB5RLQ6IPT4 315 aa21.02■□□□□ 0.96
COPB1-206ENST00000529210 CEP170Q5SW79 1584 aa21.01■□□□□ 0.95
COPB1-206ENST00000529210 KIF27Q86VH2 1401 aa20.96■□□□□ 0.95
COPB1-206ENST00000529210 SHROOM2Q13796 1616 aa20.96■□□□□ 0.95
COPB1-206ENST00000529210 IGF1RP08069 1367 aa20.92■□□□□ 0.94
COPB1-206ENST00000529210 CUL7Q14999 1698 aa20.91■□□□□ 0.94
COPB1-206ENST00000529210 ERCC6L2Q5T890 1561 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms