RNA–Protein interactions for RNA: ENST00000390009.7

ACTN4-202, Transcript of actinin alpha 4, humanhuman

TSL 1 (best) BASIC

Gene ACTN4, Length 2,102 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4-202ENST00000390009 NISCHQ9Y2I1 1504 aa40.05■■■■■ 4
ACTN4-202ENST00000390009 CCDC180Q9P1Z9 1646 aa34.66■■■■□ 3.14
ACTN4-202ENST00000390009 ZCCHC6Q5VYS8 1495 aaKnown RBP33.74■■■□□ 2.99
ACTN4-202ENST00000390009 SHROOM4Q9ULL8 1493 aa33.15■■■□□ 2.9
ACTN4-202ENST00000390009 DCAF1Q9Y4B6 1507 aa33.04■■■□□ 2.88
ACTN4-202ENST00000390009 DCAF8L2P0C7V8 631 aa33.02■■■□□ 2.88
ACTN4-202ENST00000390009 MYO15BQ96JP2 1530 aa32.44■■■□□ 2.78
ACTN4-202ENST00000390009 ABCC9O60706 1549 aa32.42■■■□□ 2.78
ACTN4-202ENST00000390009 NACADO15069 1562 aa32.15■■■□□ 2.74
ACTN4-202ENST00000390009 SUPT5HO00267 1087 aaKnown RBP32.13■■■□□ 2.73
ACTN4-202ENST00000390009 SCRIBQ14160 1630 aa32.05■■■□□ 2.72
ACTN4-202ENST00000390009 RB1CC1Q8TDY2 1594 aa31.78■■■□□ 2.68
ACTN4-202ENST00000390009 UNC13AQ9UPW8 1703 aa31.28■■■□□ 2.6
ACTN4-202ENST00000390009 RSF1Q96T23 1441 aaPredicted RBP31.28■■■□□ 2.6
ACTN4-202ENST00000390009 CECR2Q9BXF3 1484 aa31.14■■■□□ 2.58
ACTN4-202ENST00000390009 MROH2BQ7Z745 1585 aa31■■■□□ 2.55
ACTN4-202ENST00000390009 CHIC1Q5VXU3 224 aa30.97■■■□□ 2.55
ACTN4-202ENST00000390009 BAZ1AQ9NRL2 1556 aaPredicted RBP30.87■■■□□ 2.53
ACTN4-202ENST00000390009 BICRAQ9NZM4 1560 aa30.86■■■□□ 2.53
ACTN4-202ENST00000390009 WIZO95785 1651 aa30.81■■■□□ 2.52
ACTN4-202ENST00000390009 SMARCA4P51532 1647 aa30.7■■■□□ 2.51
ACTN4-202ENST00000390009 PABPN1Q86U42 306 aaKnown RBP eCLIP30.7■■■□□ 2.5
ACTN4-202ENST00000390009 TOP2AP11388 1531 aaKnown RBP30.43■■■□□ 2.46
ACTN4-202ENST00000390009 PEG3Q9GZU2 1588 aa30.26■■■□□ 2.43
ACTN4-202ENST00000390009 SMARCA2P51531 1590 aa30.19■■■□□ 2.42
ACTN4-202ENST00000390009 CCDC88BA6NC98 1476 aa30.15■■■□□ 2.42
ACTN4-202ENST00000390009 EIF4G1Q04637 1599 aaKnown RBP30.15■■■□□ 2.42
ACTN4-202ENST00000390009 TRIM41Q8WV44 630 aa30.11■■■□□ 2.41
ACTN4-202ENST00000390009 ATAD2BQ9ULI0 1458 aa30.05■■■□□ 2.4
ACTN4-202ENST00000390009 BAZ1BQ9UIG0 1483 aaKnown RBP29.93■■■□□ 2.38
ACTN4-202ENST00000390009 LOC105371045A0A1W2PR82 267 aa29.86■■■□□ 2.37
ACTN4-202ENST00000390009 ABCC8Q09428 1581 aa29.75■■■□□ 2.35
ACTN4-202ENST00000390009 HMGXB3Q12766 1538 aa29.68■■■□□ 2.34
ACTN4-202ENST00000390009 NCAPD3P42695 1498 aa29.68■■■□□ 2.34
ACTN4-202ENST00000390009 FAM9AQ8IZU1 332 aaPredicted RBP29.66■■■□□ 2.34
ACTN4-202ENST00000390009 WRNQ14191 1432 aaPredicted RBP eCLIP29.42■■■□□ 2.3
ACTN4-202ENST00000390009 CC2D2AQ9P2K1 1620 aa29.34■■■□□ 2.29
ACTN4-202ENST00000390009 SYNJ1O43426 1573 aa29.32■■■□□ 2.28
ACTN4-202ENST00000390009 EHMT2Q96KQ7 1210 aa29.28■■■□□ 2.28
ACTN4-202ENST00000390009 SOGA1O94964 1423 aa29.26■■■□□ 2.28
ACTN4-202ENST00000390009 EEA1Q15075 1411 aa29.2■■■□□ 2.27
ACTN4-202ENST00000390009 CFTRP13569 1480 aa29.18■■■□□ 2.26
ACTN4-202ENST00000390009 RUSC2Q8N2Y8 1516 aa29.15■■■□□ 2.26
ACTN4-202ENST00000390009 TOP2BQ02880 1626 aa29.13■■■□□ 2.25
ACTN4-202ENST00000390009 PRDM2Q13029 1718 aa29.11■■■□□ 2.25
ACTN4-202ENST00000390009 BIVM-ERCC5R4GMW8 1640 aa29.09■■■□□ 2.25
ACTN4-202ENST00000390009 CSRNP3Q8WYN3 585 aa29.06■■■□□ 2.24
ACTN4-202ENST00000390009 PCGF6Q9BYE7 350 aa29.03■■■□□ 2.24
ACTN4-202ENST00000390009 CADPSQ9ULU8 1353 aa28.97■■■□□ 2.23
ACTN4-202ENST00000390009 CUX1P39880 1505 aa28.94■■■□□ 2.22
ACTN4-202ENST00000390009 GOLGA3Q08378 1498 aa28.88■■■□□ 2.21
ACTN4-202ENST00000390009 TNIKQ9UKE5 1360 aa28.87■■■□□ 2.21
ACTN4-202ENST00000390009 KIF21BO75037 1637 aa28.85■■■□□ 2.21
ACTN4-202ENST00000390009 TRIM26Q12899 539 aaPredicted RBP28.83■■■□□ 2.21
ACTN4-202ENST00000390009 CEP164Q9UPV0 1460 aa28.82■■■□□ 2.2
ACTN4-202ENST00000390009 CEP162Q5TB80 1403 aa28.8■■■□□ 2.2
ACTN4-202ENST00000390009 UBTFP17480 764 aaKnown RBP28.78■■■□□ 2.2
ACTN4-202ENST00000390009 FANCD2Q9BXW9 1451 aa28.68■■■□□ 2.18
ACTN4-202ENST00000390009 NESP48681 1621 aa28.64■■■□□ 2.18
ACTN4-202ENST00000390009 RAPGEF2Q9Y4G8 1499 aa28.64■■■□□ 2.18
ACTN4-202ENST00000390009 KIF27Q86VH2 1401 aa28.62■■■□□ 2.17
ACTN4-202ENST00000390009 LAMC3Q9Y6N6 1575 aa28.6■■■□□ 2.17
ACTN4-202ENST00000390009 HRCP23327 699 aa28.55■■■□□ 2.16
ACTN4-202ENST00000390009 ERICH3Q5RHP9 1530 aa28.55■■■□□ 2.16
ACTN4-202ENST00000390009 FGD5Q6ZNL6 1462 aa28.55■■■□□ 2.16
ACTN4-202ENST00000390009 PRXQ9BXM0 1461 aa28.55■■■□□ 2.16
ACTN4-202ENST00000390009 DNAJC5BQ9UF47 199 aa28.51■■■□□ 2.15
ACTN4-202ENST00000390009 DNMBPQ6XZF7 1577 aa28.5■■■□□ 2.15
ACTN4-202ENST00000390009 PPARGC1BQ86YN6 1023 aaKnown RBP28.46■■■□□ 2.15
ACTN4-202ENST00000390009 CUX2O14529 1486 aa28.46■■■□□ 2.15
ACTN4-202ENST00000390009 CLIP1P30622 1438 aa28.45■■■□□ 2.15
ACTN4-202ENST00000390009 TOPBP1Q92547 1522 aa28.43■■■□□ 2.14
ACTN4-202ENST00000390009 PDS5BQ9NTI5 1447 aa28.35■■■□□ 2.13
ACTN4-202ENST00000390009 POLA1P09884 1462 aaPredicted RBP28.34■■■□□ 2.13
ACTN4-202ENST00000390009 IGF1RP08069 1367 aa28.32■■■□□ 2.12
ACTN4-202ENST00000390009 URB2Q14146 1524 aaKnown RBP28.31■■■□□ 2.12
ACTN4-202ENST00000390009 KIF21AQ7Z4S6 1674 aa28.3■■■□□ 2.12
ACTN4-202ENST00000390009 RAD54L2Q9Y4B4 1467 aa28.28■■■□□ 2.12
ACTN4-202ENST00000390009 ABCA10Q8WWZ4 1543 aa28.28■■■□□ 2.12
ACTN4-202ENST00000390009 VPS8Q8N3P4 1428 aa28.26■■■□□ 2.12
ACTN4-202ENST00000390009 RANGAP1P46060 587 aaPredicted RBP28.24■■■□□ 2.11
ACTN4-202ENST00000390009 CARMIL1Q5VZK9 1371 aa28.19■■■□□ 2.1
ACTN4-202ENST00000390009 WDR97A6NE52 1622 aa28.18■■■□□ 2.1
ACTN4-202ENST00000390009 TTBK1Q5TCY1 1321 aaPredicted RBP28.16■■■□□ 2.1
ACTN4-202ENST00000390009 ARAP1Q96P48 1450 aa28.12■■■□□ 2.09
ACTN4-202ENST00000390009 CUL7Q14999 1698 aa28.06■■■□□ 2.08
ACTN4-202ENST00000390009 ABCA5Q8WWZ7 1642 aa28.03■■■□□ 2.08
ACTN4-202ENST00000390009 ARHGAP35Q9NRY4 1499 aa28.02■■■□□ 2.08
ACTN4-202ENST00000390009 APLP2Q06481 763 aa28■■■□□ 2.07
ACTN4-202ENST00000390009 MRC2Q9UBG0 1479 aa27.98■■■□□ 2.07
ACTN4-202ENST00000390009 TARBP1Q13395 1621 aaKnown RBP27.97■■■□□ 2.07
ACTN4-202ENST00000390009 TDRD9Q8NDG6 1382 aaKnown RBP27.95■■■□□ 2.07
ACTN4-202ENST00000390009 GAPVD1Q14C86 1478 aa27.94■■■□□ 2.06
ACTN4-202ENST00000390009 ZEB1P37275 1124 aaPredicted RBP27.89■■■□□ 2.05
ACTN4-202ENST00000390009 CTTNBP2Q8WZ74 1663 aa27.87■■■□□ 2.05
ACTN4-202ENST00000390009 WDR62O43379 1518 aa27.82■■■□□ 2.04
ACTN4-202ENST00000390009 PBRM1Q86U86 1689 aa27.79■■■□□ 2.04
ACTN4-202ENST00000390009 EFCAB5A4FU69 1503 aa27.73■■■□□ 2.03
ACTN4-202ENST00000390009 ERCC6Q03468 1493 aa27.72■■■□□ 2.03
ACTN4-202ENST00000390009 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.71■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms