Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTX4Q96A99 AC133561.1-201ENST00000568600 2415 ntBASIC20.26■□□□□ 0.83
PTX4Q96A99 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTX4Q96A99 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTX4Q96A99 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.26■□□□□ 0.83
PTX4Q96A99 AC126177.7-201ENST00000547904 679 ntBASIC20.26■□□□□ 0.83
PTX4Q96A99 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.26■□□□□ 0.83
PTX4Q96A99 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.26■□□□□ 0.83
PTX4Q96A99 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PTX4Q96A99 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTX4Q96A99 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTX4Q96A99 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTX4Q96A99 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
PTX4Q96A99 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTX4Q96A99 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTX4Q96A99 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.25■□□□□ 0.83
PTX4Q96A99 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PTX4Q96A99 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
PTX4Q96A99 MED25-210ENST00000612854 801 ntTSL 5 BASIC20.25■□□□□ 0.83
PTX4Q96A99 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PTX4Q96A99 MED25-214ENST00000622402 642 ntTSL 5 BASIC20.25■□□□□ 0.83
PTX4Q96A99 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTX4Q96A99 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTX4Q96A99 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTX4Q96A99 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTX4Q96A99 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PTX4Q96A99 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PTX4Q96A99 AC068473.5-201ENST00000616428 2072 ntBASIC20.24■□□□□ 0.83
PTX4Q96A99 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.24■□□□□ 0.83
PTX4Q96A99 HLA-V-202ENST00000446817 847 ntBASIC20.24■□□□□ 0.83
PTX4Q96A99 DUX4L11-201ENST00000611504 1267 ntBASIC20.24■□□□□ 0.83
PTX4Q96A99 DUX4L12-201ENST00000614593 1267 ntBASIC20.24■□□□□ 0.83
PTX4Q96A99 DUX4L14-201ENST00000621227 1267 ntBASIC20.24■□□□□ 0.83
PTX4Q96A99 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
PTX4Q96A99 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PTX4Q96A99 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.24■□□□□ 0.83
PTX4Q96A99 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
PTX4Q96A99 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.23■□□□□ 0.83
PTX4Q96A99 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.23■□□□□ 0.83
PTX4Q96A99 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC20.23■□□□□ 0.83
PTX4Q96A99 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
PTX4Q96A99 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTX4Q96A99 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTX4Q96A99 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTX4Q96A99 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
PTX4Q96A99 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.22■□□□□ 0.83
PTX4Q96A99 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTX4Q96A99 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PTX4Q96A99 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PTX4Q96A99 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTX4Q96A99 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTX4Q96A99 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTX4Q96A99 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.21■□□□□ 0.83
PTX4Q96A99 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PTX4Q96A99 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.21■□□□□ 0.83
PTX4Q96A99 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.21■□□□□ 0.83
PTX4Q96A99 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.21■□□□□ 0.83
PTX4Q96A99 MIR6089-201ENST00000616698 64 ntBASIC20.21■□□□□ 0.83
PTX4Q96A99 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
PTX4Q96A99 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PTX4Q96A99 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.21■□□□□ 0.83
PTX4Q96A99 DUSP8P5-201ENST00000422884 1815 ntBASIC20.2■□□□□ 0.82
PTX4Q96A99 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.2■□□□□ 0.82
PTX4Q96A99 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
PTX4Q96A99 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PTX4Q96A99 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PTX4Q96A99 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTX4Q96A99 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTX4Q96A99 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTX4Q96A99 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20.2■□□□□ 0.82
PTX4Q96A99 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTX4Q96A99 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.2■□□□□ 0.82
PTX4Q96A99 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.2■□□□□ 0.82
PTX4Q96A99 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.19■□□□□ 0.82
PTX4Q96A99 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTX4Q96A99 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTX4Q96A99 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTX4Q96A99 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
PTX4Q96A99 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.19■□□□□ 0.82
PTX4Q96A99 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTX4Q96A99 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PTX4Q96A99 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
PTX4Q96A99 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.18■□□□□ 0.82
PTX4Q96A99 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
PTX4Q96A99 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTX4Q96A99 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
PTX4Q96A99 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.17■□□□□ 0.82
PTX4Q96A99 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.17■□□□□ 0.82
PTX4Q96A99 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTX4Q96A99 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTX4Q96A99 ZNRF2P2-203ENST00000454624 420 ntBASIC20.17■□□□□ 0.82
PTX4Q96A99 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.16■□□□□ 0.82
PTX4Q96A99 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTX4Q96A99 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTX4Q96A99 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PTX4Q96A99 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PTX4Q96A99 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTX4Q96A99 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PTX4Q96A99 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PTX4Q96A99 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms