Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC23.3■■□□□ 1.32
LMX1AQ8TE12 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC23.3■■□□□ 1.32
LMX1AQ8TE12 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
LMX1AQ8TE12 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
LMX1AQ8TE12 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
LMX1AQ8TE12 UNC93B8-201ENST00000511903 705 ntBASIC23.29■■□□□ 1.32
LMX1AQ8TE12 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC23.29■■□□□ 1.32
LMX1AQ8TE12 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
LMX1AQ8TE12 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC23.29■■□□□ 1.32
LMX1AQ8TE12 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
LMX1AQ8TE12 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.28■■□□□ 1.32
LMX1AQ8TE12 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
LMX1AQ8TE12 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.28■■□□□ 1.32
LMX1AQ8TE12 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
LMX1AQ8TE12 TSPY9P-201ENST00000440215 945 ntBASIC23.28■■□□□ 1.32
LMX1AQ8TE12 TSPY11P-201ENST00000442607 1045 ntBASIC23.28■■□□□ 1.32
LMX1AQ8TE12 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC23.28■■□□□ 1.32
LMX1AQ8TE12 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
LMX1AQ8TE12 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
LMX1AQ8TE12 KRT16P3-201ENST00000439127 1283 ntBASIC23.27■■□□□ 1.32
LMX1AQ8TE12 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
LMX1AQ8TE12 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
LMX1AQ8TE12 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.26■■□□□ 1.31
LMX1AQ8TE12 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC23.26■■□□□ 1.31
LMX1AQ8TE12 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
LMX1AQ8TE12 MIR4281-201ENST00000580852 62 ntBASIC23.26■■□□□ 1.31
LMX1AQ8TE12 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.26■■□□□ 1.31
LMX1AQ8TE12 AC021242.3-201ENST00000607598 1377 ntBASIC23.26■■□□□ 1.31
LMX1AQ8TE12 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.25■■□□□ 1.31
LMX1AQ8TE12 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
LMX1AQ8TE12 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
LMX1AQ8TE12 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC23.25■■□□□ 1.31
LMX1AQ8TE12 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC23.25■■□□□ 1.31
LMX1AQ8TE12 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC23.25■■□□□ 1.31
LMX1AQ8TE12 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
LMX1AQ8TE12 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LMX1AQ8TE12 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
LMX1AQ8TE12 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC23.24■■□□□ 1.31
LMX1AQ8TE12 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC23.24■■□□□ 1.31
LMX1AQ8TE12 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC23.24■■□□□ 1.31
LMX1AQ8TE12 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.24■■□□□ 1.31
LMX1AQ8TE12 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC23.24■■□□□ 1.31
LMX1AQ8TE12 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LMX1AQ8TE12 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LMX1AQ8TE12 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LMX1AQ8TE12 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.23■■□□□ 1.31
LMX1AQ8TE12 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC23.23■■□□□ 1.31
LMX1AQ8TE12 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
LMX1AQ8TE12 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LMX1AQ8TE12 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LMX1AQ8TE12 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LMX1AQ8TE12 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
LMX1AQ8TE12 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC23.22■■□□□ 1.31
LMX1AQ8TE12 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.22■■□□□ 1.31
LMX1AQ8TE12 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC23.22■■□□□ 1.31
LMX1AQ8TE12 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.22■■□□□ 1.31
LMX1AQ8TE12 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC23.22■■□□□ 1.31
LMX1AQ8TE12 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
LMX1AQ8TE12 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
LMX1AQ8TE12 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
LMX1AQ8TE12 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
LMX1AQ8TE12 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
LMX1AQ8TE12 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC23.21■■□□□ 1.31
LMX1AQ8TE12 AC008406.3-201ENST00000620001 1374 ntBASIC23.21■■□□□ 1.31
LMX1AQ8TE12 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC23.21■■□□□ 1.31
LMX1AQ8TE12 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC23.21■■□□□ 1.31
LMX1AQ8TE12 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
LMX1AQ8TE12 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
LMX1AQ8TE12 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.2■■□□□ 1.3
LMX1AQ8TE12 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
LMX1AQ8TE12 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC23.2■■□□□ 1.3
LMX1AQ8TE12 AC092028.1-203ENST00000608262 953 ntBASIC23.2■■□□□ 1.3
LMX1AQ8TE12 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.2■■□□□ 1.3
LMX1AQ8TE12 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
LMX1AQ8TE12 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
LMX1AQ8TE12 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
LMX1AQ8TE12 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
LMX1AQ8TE12 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
LMX1AQ8TE12 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
LMX1AQ8TE12 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.19■■□□□ 1.3
LMX1AQ8TE12 AC011551.1-201ENST00000614101 683 ntBASIC23.19■■□□□ 1.3
LMX1AQ8TE12 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
LMX1AQ8TE12 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LMX1AQ8TE12 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LMX1AQ8TE12 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23.18■■□□□ 1.3
LMX1AQ8TE12 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
LMX1AQ8TE12 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
LMX1AQ8TE12 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LMX1AQ8TE12 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LMX1AQ8TE12 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.18■■□□□ 1.3
LMX1AQ8TE12 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LMX1AQ8TE12 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
LMX1AQ8TE12 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
LMX1AQ8TE12 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC23.17■■□□□ 1.3
LMX1AQ8TE12 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LMX1AQ8TE12 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
LMX1AQ8TE12 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
LMX1AQ8TE12 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
LMX1AQ8TE12 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
LMX1AQ8TE12 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms