Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.95■■□□□ 1.42
HDDC3Q8N4P3 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC23.94■■□□□ 1.42
HDDC3Q8N4P3 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.94■■□□□ 1.42
HDDC3Q8N4P3 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
HDDC3Q8N4P3 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC23.94■■□□□ 1.42
HDDC3Q8N4P3 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC23.94■■□□□ 1.42
HDDC3Q8N4P3 MIR4787-201ENST00000607364 84 ntBASIC23.94■■□□□ 1.42
HDDC3Q8N4P3 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
HDDC3Q8N4P3 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HDDC3Q8N4P3 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HDDC3Q8N4P3 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
HDDC3Q8N4P3 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC23.93■■□□□ 1.42
HDDC3Q8N4P3 AC120024.1-201ENST00000562672 995 ntBASIC23.93■■□□□ 1.42
HDDC3Q8N4P3 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
HDDC3Q8N4P3 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC23.92■■□□□ 1.42
HDDC3Q8N4P3 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
HDDC3Q8N4P3 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
HDDC3Q8N4P3 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
HDDC3Q8N4P3 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC23.92■■□□□ 1.42
HDDC3Q8N4P3 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC23.92■■□□□ 1.42
HDDC3Q8N4P3 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC23.92■■□□□ 1.42
HDDC3Q8N4P3 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
HDDC3Q8N4P3 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
HDDC3Q8N4P3 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
HDDC3Q8N4P3 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
HDDC3Q8N4P3 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
HDDC3Q8N4P3 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
HDDC3Q8N4P3 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC23.91■■□□□ 1.42
HDDC3Q8N4P3 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
HDDC3Q8N4P3 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
HDDC3Q8N4P3 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
HDDC3Q8N4P3 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.91■■□□□ 1.42
HDDC3Q8N4P3 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
HDDC3Q8N4P3 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
HDDC3Q8N4P3 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
HDDC3Q8N4P3 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
HDDC3Q8N4P3 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC23.9■■□□□ 1.42
HDDC3Q8N4P3 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
HDDC3Q8N4P3 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
HDDC3Q8N4P3 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
HDDC3Q8N4P3 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.9■■□□□ 1.42
HDDC3Q8N4P3 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
HDDC3Q8N4P3 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
HDDC3Q8N4P3 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.42
HDDC3Q8N4P3 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC23.89■■□□□ 1.41
HDDC3Q8N4P3 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
HDDC3Q8N4P3 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC23.89■■□□□ 1.41
HDDC3Q8N4P3 KRT16P3-201ENST00000439127 1283 ntBASIC23.89■■□□□ 1.41
HDDC3Q8N4P3 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC23.89■■□□□ 1.41
HDDC3Q8N4P3 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC23.89■■□□□ 1.41
HDDC3Q8N4P3 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
HDDC3Q8N4P3 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
HDDC3Q8N4P3 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.89■■□□□ 1.41
HDDC3Q8N4P3 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.88■■□□□ 1.41
HDDC3Q8N4P3 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
HDDC3Q8N4P3 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
HDDC3Q8N4P3 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
HDDC3Q8N4P3 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
HDDC3Q8N4P3 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
HDDC3Q8N4P3 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC23.87■■□□□ 1.41
HDDC3Q8N4P3 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC23.87■■□□□ 1.41
HDDC3Q8N4P3 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC23.87■■□□□ 1.41
HDDC3Q8N4P3 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
HDDC3Q8N4P3 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
HDDC3Q8N4P3 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
HDDC3Q8N4P3 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC23.86■■□□□ 1.41
HDDC3Q8N4P3 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
HDDC3Q8N4P3 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
HDDC3Q8N4P3 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
HDDC3Q8N4P3 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
HDDC3Q8N4P3 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
HDDC3Q8N4P3 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
HDDC3Q8N4P3 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC23.85■■□□□ 1.41
HDDC3Q8N4P3 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
HDDC3Q8N4P3 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
HDDC3Q8N4P3 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
HDDC3Q8N4P3 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
HDDC3Q8N4P3 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.84■■□□□ 1.41
HDDC3Q8N4P3 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
HDDC3Q8N4P3 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
HDDC3Q8N4P3 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC23.83■■□□□ 1.41
HDDC3Q8N4P3 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC23.83■■□□□ 1.41
HDDC3Q8N4P3 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC23.83■■□□□ 1.41
HDDC3Q8N4P3 UNC93B8-201ENST00000511903 705 ntBASIC23.83■■□□□ 1.41
HDDC3Q8N4P3 AC137630.3-201ENST00000607245 391 ntBASIC23.83■■□□□ 1.41
HDDC3Q8N4P3 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
HDDC3Q8N4P3 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
HDDC3Q8N4P3 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
HDDC3Q8N4P3 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HDDC3Q8N4P3 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC23.82■■□□□ 1.4
HDDC3Q8N4P3 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HDDC3Q8N4P3 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.82■■□□□ 1.4
HDDC3Q8N4P3 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC23.82■■□□□ 1.4
HDDC3Q8N4P3 RALB-208ENST00000631312 311 ntTSL 5 BASIC23.82■■□□□ 1.4
HDDC3Q8N4P3 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC23.82■■□□□ 1.4
HDDC3Q8N4P3 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
HDDC3Q8N4P3 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
HDDC3Q8N4P3 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
HDDC3Q8N4P3 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC23.81■■□□□ 1.4
HDDC3Q8N4P3 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.81■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms