Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC27.36■■□□□ 1.97
CCNA1P78396 RALB-208ENST00000631312 311 ntTSL 5 BASIC27.36■■□□□ 1.97
CCNA1P78396 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
CCNA1P78396 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CCNA1P78396 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CCNA1P78396 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC27.35■■□□□ 1.97
CCNA1P78396 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC27.35■■□□□ 1.97
CCNA1P78396 GAK-223ENST00000628912 497 ntTSL 5 BASIC27.35■■□□□ 1.97
CCNA1P78396 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CCNA1P78396 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC27.34■■□□□ 1.97
CCNA1P78396 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC27.34■■□□□ 1.97
CCNA1P78396 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC27.34■■□□□ 1.97
CCNA1P78396 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
CCNA1P78396 MIR6724-1-201ENST00000616420 92 ntBASIC27.34■■□□□ 1.97
CCNA1P78396 MIR6724-2-201ENST00000616483 92 ntBASIC27.34■■□□□ 1.97
CCNA1P78396 MIR6724-4-201ENST00000617390 92 ntBASIC27.34■■□□□ 1.97
CCNA1P78396 MIR6724-3-201ENST00000622482 92 ntBASIC27.34■■□□□ 1.97
CCNA1P78396 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CCNA1P78396 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
CCNA1P78396 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC27.33■■□□□ 1.97
CCNA1P78396 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
CCNA1P78396 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CCNA1P78396 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CCNA1P78396 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC27.33■■□□□ 1.97
CCNA1P78396 NALT1-201ENST00000429224 738 ntTSL 5 BASIC27.33■■□□□ 1.97
CCNA1P78396 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC27.33■■□□□ 1.97
CCNA1P78396 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC27.33■■□□□ 1.97
CCNA1P78396 AL117332.1-201ENST00000622628 974 ntBASIC27.33■■□□□ 1.97
CCNA1P78396 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
CCNA1P78396 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC27.33■■□□□ 1.97
CCNA1P78396 SNAI3-AS1-204ENST00000567997 2048 ntBASIC27.33■■□□□ 1.96
CCNA1P78396 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC27.32■■□□□ 1.96
CCNA1P78396 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CCNA1P78396 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC27.32■■□□□ 1.96
CCNA1P78396 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
CCNA1P78396 AL136116.3-201ENST00000402907 1138 ntBASIC27.32■■□□□ 1.96
CCNA1P78396 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC27.32■■□□□ 1.96
CCNA1P78396 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CCNA1P78396 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC27.31■■□□□ 1.96
CCNA1P78396 MIR3621-201ENST00000580529 85 ntBASIC27.31■■□□□ 1.96
CCNA1P78396 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC27.31■■□□□ 1.96
CCNA1P78396 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CCNA1P78396 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CCNA1P78396 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CCNA1P78396 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
CCNA1P78396 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC27.3■■□□□ 1.96
CCNA1P78396 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CCNA1P78396 AL356740.2-201ENST00000601559 647 ntBASIC27.3■■□□□ 1.96
CCNA1P78396 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC27.3■■□□□ 1.96
CCNA1P78396 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
CCNA1P78396 TK2-202ENST00000417693 1046 ntTSL 2 BASIC27.29■■□□□ 1.96
CCNA1P78396 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC27.29■■□□□ 1.96
CCNA1P78396 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC27.29■■□□□ 1.96
CCNA1P78396 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC27.29■■□□□ 1.96
CCNA1P78396 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
CCNA1P78396 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC27.28■■□□□ 1.96
CCNA1P78396 SSSCA1-AS1-201ENST00000567594 614 ntBASIC27.28■■□□□ 1.96
CCNA1P78396 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
CCNA1P78396 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
CCNA1P78396 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC27.27■■□□□ 1.96
CCNA1P78396 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC27.27■■□□□ 1.96
CCNA1P78396 SENP5-202ENST00000419026 973 ntTSL 3 BASIC27.27■■□□□ 1.96
CCNA1P78396 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC27.27■■□□□ 1.96
CCNA1P78396 EXOG-217ENST00000630638 197 ntTSL 5 BASIC27.27■■□□□ 1.96
CCNA1P78396 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC27.26■■□□□ 1.96
CCNA1P78396 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CCNA1P78396 LSM4-201ENST00000252816 986 ntTSL 2 BASIC27.26■■□□□ 1.95
CCNA1P78396 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
CCNA1P78396 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC27.26■■□□□ 1.95
CCNA1P78396 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC27.26■■□□□ 1.95
CCNA1P78396 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CCNA1P78396 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
CCNA1P78396 SHF-208ENST00000560734 1731 ntTSL 3 BASIC27.25■■□□□ 1.95
CCNA1P78396 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
CCNA1P78396 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC27.25■■□□□ 1.95
CCNA1P78396 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC27.25■■□□□ 1.95
CCNA1P78396 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC27.25■■□□□ 1.95
CCNA1P78396 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC27.24■■□□□ 1.95
CCNA1P78396 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC27.24■■□□□ 1.95
CCNA1P78396 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CCNA1P78396 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC27.24■■□□□ 1.95
CCNA1P78396 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CCNA1P78396 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC27.24■■□□□ 1.95
CCNA1P78396 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CCNA1P78396 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CCNA1P78396 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC27.23■■□□□ 1.95
CCNA1P78396 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CCNA1P78396 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
CCNA1P78396 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC27.22■■□□□ 1.95
CCNA1P78396 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
CCNA1P78396 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
CCNA1P78396 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC27.21■■□□□ 1.95
CCNA1P78396 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
CCNA1P78396 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
CCNA1P78396 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC27.21■■□□□ 1.95
CCNA1P78396 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC27.21■■□□□ 1.95
CCNA1P78396 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
CCNA1P78396 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC27.2■■□□□ 1.95
CCNA1P78396 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
CCNA1P78396 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC27.2■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms