Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC24.44■■□□□ 1.5
SOX9P48436 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC24.44■■□□□ 1.5
SOX9P48436 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC24.44■■□□□ 1.5
SOX9P48436 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
SOX9P48436 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
SOX9P48436 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SOX9P48436 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SOX9P48436 MIR638-201ENST00000385237 100 ntBASIC24.43■■□□□ 1.5
SOX9P48436 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
SOX9P48436 SRR-208ENST00000576848 588 ntTSL 4 BASIC24.43■■□□□ 1.5
SOX9P48436 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC24.43■■□□□ 1.5
SOX9P48436 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC24.43■■□□□ 1.5
SOX9P48436 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SOX9P48436 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SOX9P48436 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC24.43■■□□□ 1.5
SOX9P48436 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC24.42■■□□□ 1.5
SOX9P48436 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC24.42■■□□□ 1.5
SOX9P48436 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SOX9P48436 RPP21-222ENST00000433076 577 ntTSL 2 BASIC24.41■■□□□ 1.5
SOX9P48436 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC24.41■■□□□ 1.5
SOX9P48436 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC24.41■■□□□ 1.5
SOX9P48436 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
SOX9P48436 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC24.4■■□□□ 1.5
SOX9P48436 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC24.4■■□□□ 1.5
SOX9P48436 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SOX9P48436 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SOX9P48436 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SOX9P48436 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
SOX9P48436 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.5
SOX9P48436 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.5
SOX9P48436 NALT1-201ENST00000429224 738 ntTSL 5 BASIC24.39■■□□□ 1.49
SOX9P48436 AC010997.5-201ENST00000609182 354 ntBASIC24.39■■□□□ 1.49
SOX9P48436 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
SOX9P48436 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
SOX9P48436 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC24.38■■□□□ 1.49
SOX9P48436 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SOX9P48436 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SOX9P48436 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SOX9P48436 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SOX9P48436 AL117332.1-201ENST00000622628 974 ntBASIC24.38■■□□□ 1.49
SOX9P48436 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
SOX9P48436 SHF-206ENST00000560471 2499 ntTSL 5 BASIC24.38■■□□□ 1.49
SOX9P48436 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
SOX9P48436 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
SOX9P48436 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
SOX9P48436 AL136116.3-201ENST00000402907 1138 ntBASIC24.37■■□□□ 1.49
SOX9P48436 SENP5-202ENST00000419026 973 ntTSL 3 BASIC24.37■■□□□ 1.49
SOX9P48436 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
SOX9P48436 GAK-223ENST00000628912 497 ntTSL 5 BASIC24.37■■□□□ 1.49
SOX9P48436 RALB-208ENST00000631312 311 ntTSL 5 BASIC24.37■■□□□ 1.49
SOX9P48436 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC24.37■■□□□ 1.49
SOX9P48436 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SOX9P48436 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC24.36■■□□□ 1.49
SOX9P48436 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC24.36■■□□□ 1.49
SOX9P48436 AL139246.5-201ENST00000606645 996 ntBASIC24.36■■□□□ 1.49
SOX9P48436 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
SOX9P48436 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
SOX9P48436 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
SOX9P48436 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SOX9P48436 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SOX9P48436 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SOX9P48436 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SOX9P48436 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC24.35■■□□□ 1.49
SOX9P48436 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SOX9P48436 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC24.35■■□□□ 1.49
SOX9P48436 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC24.35■■□□□ 1.49
SOX9P48436 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
SOX9P48436 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
SOX9P48436 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC24.35■■□□□ 1.49
SOX9P48436 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC24.34■■□□□ 1.49
SOX9P48436 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC24.34■■□□□ 1.49
SOX9P48436 LSM4-201ENST00000252816 986 ntTSL 2 BASIC24.34■■□□□ 1.49
SOX9P48436 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
SOX9P48436 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC24.34■■□□□ 1.49
SOX9P48436 MTDHP2-201ENST00000601468 714 ntBASIC24.34■■□□□ 1.49
SOX9P48436 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC24.34■■□□□ 1.49
SOX9P48436 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
SOX9P48436 SNAI3-AS1-204ENST00000567997 2048 ntBASIC24.34■■□□□ 1.49
SOX9P48436 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC24.33■■□□□ 1.49
SOX9P48436 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
SOX9P48436 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC24.33■■□□□ 1.49
SOX9P48436 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC24.33■■□□□ 1.49
SOX9P48436 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC24.33■■□□□ 1.49
SOX9P48436 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
SOX9P48436 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC24.33■■□□□ 1.48
SOX9P48436 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.48
SOX9P48436 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
SOX9P48436 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
SOX9P48436 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC24.32■■□□□ 1.48
SOX9P48436 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC24.32■■□□□ 1.48
SOX9P48436 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC24.32■■□□□ 1.48
SOX9P48436 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC24.32■■□□□ 1.48
SOX9P48436 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
SOX9P48436 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SOX9P48436 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
SOX9P48436 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
SOX9P48436 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SOX9P48436 MIR3621-201ENST00000580529 85 ntBASIC24.31■■□□□ 1.48
SOX9P48436 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SOX9P48436 AC011551.1-201ENST00000614101 683 ntBASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms