Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CSPG4Q6UVK1 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.9■□□□□ 0.78
CSPG4Q6UVK1 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CSPG4Q6UVK1 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
CSPG4Q6UVK1 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CSPG4Q6UVK1 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
CSPG4Q6UVK1 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CSPG4Q6UVK1 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
CSPG4Q6UVK1 SUDS3P1-201ENST00000505831 966 ntBASIC19.89■□□□□ 0.77
CSPG4Q6UVK1 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.89■□□□□ 0.77
CSPG4Q6UVK1 AL356740.2-201ENST00000601559 647 ntBASIC19.89■□□□□ 0.77
CSPG4Q6UVK1 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CSPG4Q6UVK1 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.88■□□□□ 0.77
CSPG4Q6UVK1 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CSPG4Q6UVK1 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.88■□□□□ 0.77
CSPG4Q6UVK1 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CSPG4Q6UVK1 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CSPG4Q6UVK1 LINC01003-201ENST00000564834 1764 ntBASIC19.88■□□□□ 0.77
CSPG4Q6UVK1 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CSPG4Q6UVK1 MIR4281-201ENST00000580852 62 ntBASIC19.88■□□□□ 0.77
CSPG4Q6UVK1 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC19.88■□□□□ 0.77
CSPG4Q6UVK1 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CSPG4Q6UVK1 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CSPG4Q6UVK1 LSM4-201ENST00000252816 986 ntTSL 2 BASIC19.87■□□□□ 0.77
CSPG4Q6UVK1 AL117332.1-201ENST00000622628 974 ntBASIC19.87■□□□□ 0.77
CSPG4Q6UVK1 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CSPG4Q6UVK1 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
CSPG4Q6UVK1 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
CSPG4Q6UVK1 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CSPG4Q6UVK1 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CSPG4Q6UVK1 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CSPG4Q6UVK1 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC19.86■□□□□ 0.77
CSPG4Q6UVK1 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CSPG4Q6UVK1 MIR5787-201ENST00000611784 55 ntBASIC19.86■□□□□ 0.77
CSPG4Q6UVK1 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CSPG4Q6UVK1 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC19.86■□□□□ 0.77
CSPG4Q6UVK1 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CSPG4Q6UVK1 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CSPG4Q6UVK1 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CSPG4Q6UVK1 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CSPG4Q6UVK1 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
CSPG4Q6UVK1 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CSPG4Q6UVK1 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
CSPG4Q6UVK1 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CSPG4Q6UVK1 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CSPG4Q6UVK1 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CSPG4Q6UVK1 KRT18P10-201ENST00000388836 1287 ntBASIC19.85■□□□□ 0.77
CSPG4Q6UVK1 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CSPG4Q6UVK1 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.85■□□□□ 0.77
CSPG4Q6UVK1 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CSPG4Q6UVK1 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CSPG4Q6UVK1 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CSPG4Q6UVK1 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.84■□□□□ 0.77
CSPG4Q6UVK1 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CSPG4Q6UVK1 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.84■□□□□ 0.77
CSPG4Q6UVK1 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CSPG4Q6UVK1 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CSPG4Q6UVK1 PROC-203ENST00000409048 1586 ntTSL 5 BASIC19.83■□□□□ 0.77
CSPG4Q6UVK1 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CSPG4Q6UVK1 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.83■□□□□ 0.76
CSPG4Q6UVK1 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
CSPG4Q6UVK1 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.83■□□□□ 0.76
CSPG4Q6UVK1 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CSPG4Q6UVK1 AL449106.1-201ENST00000608517 1980 ntBASIC19.83■□□□□ 0.76
CSPG4Q6UVK1 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CSPG4Q6UVK1 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC19.82■□□□□ 0.76
CSPG4Q6UVK1 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.82■□□□□ 0.76
CSPG4Q6UVK1 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.82■□□□□ 0.76
CSPG4Q6UVK1 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC19.82■□□□□ 0.76
CSPG4Q6UVK1 DRD5P2-201ENST00000421395 2012 ntBASIC19.82■□□□□ 0.76
CSPG4Q6UVK1 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
CSPG4Q6UVK1 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC19.82■□□□□ 0.76
CSPG4Q6UVK1 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CSPG4Q6UVK1 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CSPG4Q6UVK1 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.82■□□□□ 0.76
CSPG4Q6UVK1 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CSPG4Q6UVK1 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CSPG4Q6UVK1 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC19.82■□□□□ 0.76
CSPG4Q6UVK1 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CSPG4Q6UVK1 AL512631.2-201ENST00000604634 923 ntBASIC19.81■□□□□ 0.76
CSPG4Q6UVK1 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.81■□□□□ 0.76
CSPG4Q6UVK1 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CSPG4Q6UVK1 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CSPG4Q6UVK1 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CSPG4Q6UVK1 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CSPG4Q6UVK1 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CSPG4Q6UVK1 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.81■□□□□ 0.76
CSPG4Q6UVK1 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC19.81■□□□□ 0.76
CSPG4Q6UVK1 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CSPG4Q6UVK1 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CSPG4Q6UVK1 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CSPG4Q6UVK1 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CSPG4Q6UVK1 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CSPG4Q6UVK1 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.8■□□□□ 0.76
CSPG4Q6UVK1 AC010997.5-201ENST00000609182 354 ntBASIC19.8■□□□□ 0.76
CSPG4Q6UVK1 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CSPG4Q6UVK1 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CSPG4Q6UVK1 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CSPG4Q6UVK1 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.79■□□□□ 0.76
CSPG4Q6UVK1 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms