Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
COL18A1P39060 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
COL18A1P39060 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC32.24■■■□□ 2.75
COL18A1P39060 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
COL18A1P39060 BX255925.1-201ENST00000566954 1854 ntBASIC32.24■■■□□ 2.75
COL18A1P39060 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
COL18A1P39060 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
COL18A1P39060 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC32.24■■■□□ 2.75
COL18A1P39060 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC32.24■■■□□ 2.75
COL18A1P39060 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC32.24■■■□□ 2.75
COL18A1P39060 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC32.23■■■□□ 2.75
COL18A1P39060 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC32.23■■■□□ 2.75
COL18A1P39060 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
COL18A1P39060 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC32.22■■■□□ 2.75
COL18A1P39060 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
COL18A1P39060 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC32.22■■■□□ 2.75
COL18A1P39060 AC110285.6-201ENST00000617652 491 ntBASIC32.22■■■□□ 2.75
COL18A1P39060 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
COL18A1P39060 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC32.22■■■□□ 2.75
COL18A1P39060 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC32.22■■■□□ 2.75
COL18A1P39060 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC32.21■■■□□ 2.75
COL18A1P39060 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC32.21■■■□□ 2.75
COL18A1P39060 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC32.21■■■□□ 2.75
COL18A1P39060 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC32.21■■■□□ 2.75
COL18A1P39060 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
COL18A1P39060 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
COL18A1P39060 SRR-208ENST00000576848 588 ntTSL 4 BASIC32.2■■■□□ 2.75
COL18A1P39060 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.74
COL18A1P39060 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC32.19■■■□□ 2.74
COL18A1P39060 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
COL18A1P39060 ST7-205ENST00000393446 2114 ntTSL 5 BASIC32.19■■■□□ 2.74
COL18A1P39060 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC32.19■■■□□ 2.74
COL18A1P39060 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
COL18A1P39060 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
COL18A1P39060 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC32.18■■■□□ 2.74
COL18A1P39060 QDPR-206ENST00000508623 601 ntTSL 3 BASIC32.18■■■□□ 2.74
COL18A1P39060 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC32.18■■■□□ 2.74
COL18A1P39060 AL139246.5-201ENST00000606645 996 ntBASIC32.18■■■□□ 2.74
COL18A1P39060 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC32.18■■■□□ 2.74
COL18A1P39060 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
COL18A1P39060 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
COL18A1P39060 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC32.17■■■□□ 2.74
COL18A1P39060 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC32.17■■■□□ 2.74
COL18A1P39060 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
COL18A1P39060 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC32.17■■■□□ 2.74
COL18A1P39060 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
COL18A1P39060 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC32.17■■■□□ 2.74
COL18A1P39060 RPP21-222ENST00000433076 577 ntTSL 2 BASIC32.17■■■□□ 2.74
COL18A1P39060 AL512631.2-201ENST00000604634 923 ntBASIC32.17■■■□□ 2.74
COL18A1P39060 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
COL18A1P39060 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
COL18A1P39060 MIR4466-201ENST00000606121 54 ntBASIC32.15■■■□□ 2.74
COL18A1P39060 RALB-208ENST00000631312 311 ntTSL 5 BASIC32.15■■■□□ 2.74
COL18A1P39060 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC32.15■■■□□ 2.74
COL18A1P39060 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
COL18A1P39060 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
COL18A1P39060 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC32.14■■■□□ 2.74
COL18A1P39060 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC32.14■■■□□ 2.74
COL18A1P39060 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
COL18A1P39060 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC32.14■■■□□ 2.74
COL18A1P39060 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC32.14■■■□□ 2.74
COL18A1P39060 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC32.14■■■□□ 2.74
COL18A1P39060 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC32.13■■■□□ 2.73
COL18A1P39060 AC011551.1-201ENST00000614101 683 ntBASIC32.13■■■□□ 2.73
COL18A1P39060 ST7-202ENST00000323984 2142 ntTSL 5 BASIC32.13■■■□□ 2.73
COL18A1P39060 ST7-207ENST00000393449 2127 ntTSL 5 BASIC32.13■■■□□ 2.73
COL18A1P39060 AL136116.3-201ENST00000402907 1138 ntBASIC32.12■■■□□ 2.73
COL18A1P39060 MIR3621-201ENST00000580529 85 ntBASIC32.12■■■□□ 2.73
COL18A1P39060 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
COL18A1P39060 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC32.12■■■□□ 2.73
COL18A1P39060 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC32.12■■■□□ 2.73
COL18A1P39060 MIR6724-1-201ENST00000616420 92 ntBASIC32.12■■■□□ 2.73
COL18A1P39060 MIR6724-2-201ENST00000616483 92 ntBASIC32.12■■■□□ 2.73
COL18A1P39060 MIR6724-4-201ENST00000617390 92 ntBASIC32.12■■■□□ 2.73
COL18A1P39060 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
COL18A1P39060 MIR6724-3-201ENST00000622482 92 ntBASIC32.12■■■□□ 2.73
COL18A1P39060 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC32.11■■■□□ 2.73
COL18A1P39060 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC32.11■■■□□ 2.73
COL18A1P39060 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC32.11■■■□□ 2.73
COL18A1P39060 NALT1-201ENST00000429224 738 ntTSL 5 BASIC32.11■■■□□ 2.73
COL18A1P39060 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC32.1■■■□□ 2.73
COL18A1P39060 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC32.1■■■□□ 2.73
COL18A1P39060 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC32.1■■■□□ 2.73
COL18A1P39060 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC32.1■■■□□ 2.73
COL18A1P39060 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC32.09■■■□□ 2.73
COL18A1P39060 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC32.09■■■□□ 2.73
COL18A1P39060 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC32.09■■■□□ 2.73
COL18A1P39060 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC32.09■■■□□ 2.73
COL18A1P39060 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC32.09■■■□□ 2.73
COL18A1P39060 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC32.09■■■□□ 2.73
COL18A1P39060 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
COL18A1P39060 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
COL18A1P39060 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
COL18A1P39060 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC32.08■■■□□ 2.73
COL18A1P39060 LSM4-201ENST00000252816 986 ntTSL 2 BASIC32.08■■■□□ 2.73
COL18A1P39060 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC32.08■■■□□ 2.73
COL18A1P39060 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
COL18A1P39060 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC32.07■■■□□ 2.72
COL18A1P39060 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
COL18A1P39060 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC32.06■■■□□ 2.72
Retrieved 100 of 98,524 protein–RNA pairs in 593.2 ms