Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC26.58■■□□□ 1.85
NPHP3-ACAD11A0A0J9YXS1 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
NPHP3-ACAD11A0A0J9YXS1 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
NPHP3-ACAD11A0A0J9YXS1 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
NPHP3-ACAD11A0A0J9YXS1 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC26.58■■□□□ 1.85
NPHP3-ACAD11A0A0J9YXS1 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.58■■□□□ 1.85
NPHP3-ACAD11A0A0J9YXS1 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 DUX4L18-201ENST00000553347 1267 ntBASIC26.57■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC26.57■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 AC020928.2-201ENST00000588717 2197 ntBASIC26.55■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC26.55■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 AC018755.3-202ENST00000596210 929 ntBASIC26.54■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 AC004987.1-201ENST00000428627 508 ntBASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 AC097639.1-201ENST00000565519 1891 ntBASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC26.52■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC26.52■■□□□ 1.84
NPHP3-ACAD11A0A0J9YXS1 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC26.51■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC26.51■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC26.51■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 MIR6765-201ENST00000614092 87 ntBASIC26.51■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC26.51■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC26.5■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 CEBPA-AS1-201ENST00000592982 2198 ntBASIC26.49■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC26.49■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 ATP5G2P3-201ENST00000429083 425 ntBASIC26.49■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC26.49■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC26.49■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC26.48■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC26.47■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC26.46■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 AL033527.3-201ENST00000566366 1196 ntBASIC26.46■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
NPHP3-ACAD11A0A0J9YXS1 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 RPS2P7-201ENST00000447334 885 ntBASIC26.45■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC26.45■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC26.45■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 IDNK-203ENST00000405990 629 ntTSL 2 BASIC26.44■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC26.44■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 AC012354.3-201ENST00000623734 483 ntBASIC26.44■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC26.44■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC26.43■■□□□ 1.82
NPHP3-ACAD11A0A0J9YXS1 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms