Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
RHBDD3Q9Y3P4 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RHBDD3Q9Y3P4 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
RHBDD3Q9Y3P4 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RHBDD3Q9Y3P4 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.94■□□□□ 0.94
RHBDD3Q9Y3P4 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.94■□□□□ 0.94
RHBDD3Q9Y3P4 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RHBDD3Q9Y3P4 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RHBDD3Q9Y3P4 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RHBDD3Q9Y3P4 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
RHBDD3Q9Y3P4 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RHBDD3Q9Y3P4 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.92■□□□□ 0.94
RHBDD3Q9Y3P4 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
RHBDD3Q9Y3P4 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RHBDD3Q9Y3P4 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
RHBDD3Q9Y3P4 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
RHBDD3Q9Y3P4 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
RHBDD3Q9Y3P4 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.92■□□□□ 0.94
RHBDD3Q9Y3P4 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RHBDD3Q9Y3P4 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RHBDD3Q9Y3P4 MBP-237ENST00000579129 1052 ntTSL 5 BASIC20.91■□□□□ 0.94
RHBDD3Q9Y3P4 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RHBDD3Q9Y3P4 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
RHBDD3Q9Y3P4 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.9■□□□□ 0.94
RHBDD3Q9Y3P4 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
RHBDD3Q9Y3P4 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RHBDD3Q9Y3P4 AC060814.1-201ENST00000554326 538 ntBASIC20.9■□□□□ 0.94
RHBDD3Q9Y3P4 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RHBDD3Q9Y3P4 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RHBDD3Q9Y3P4 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RHBDD3Q9Y3P4 AC142381.3-201ENST00000568208 1670 ntBASIC20.89■□□□□ 0.94
RHBDD3Q9Y3P4 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RHBDD3Q9Y3P4 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RHBDD3Q9Y3P4 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
RHBDD3Q9Y3P4 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RHBDD3Q9Y3P4 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
RHBDD3Q9Y3P4 AC096887.2-201ENST00000623443 1957 ntBASIC20.88■□□□□ 0.93
RHBDD3Q9Y3P4 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RHBDD3Q9Y3P4 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RHBDD3Q9Y3P4 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RHBDD3Q9Y3P4 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.88■□□□□ 0.93
RHBDD3Q9Y3P4 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RHBDD3Q9Y3P4 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.88■□□□□ 0.93
RHBDD3Q9Y3P4 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RHBDD3Q9Y3P4 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RHBDD3Q9Y3P4 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.88■□□□□ 0.93
RHBDD3Q9Y3P4 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
RHBDD3Q9Y3P4 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RHBDD3Q9Y3P4 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
RHBDD3Q9Y3P4 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
RHBDD3Q9Y3P4 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
RHBDD3Q9Y3P4 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDD3Q9Y3P4 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC20.86■□□□□ 0.93
RHBDD3Q9Y3P4 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDD3Q9Y3P4 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDD3Q9Y3P4 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.86■□□□□ 0.93
RHBDD3Q9Y3P4 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDD3Q9Y3P4 AL157400.5-201ENST00000507624 621 ntBASIC20.86■□□□□ 0.93
RHBDD3Q9Y3P4 MIR4449-201ENST00000578365 66 ntBASIC20.86■□□□□ 0.93
RHBDD3Q9Y3P4 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RHBDD3Q9Y3P4 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
RHBDD3Q9Y3P4 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
RHBDD3Q9Y3P4 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.85■□□□□ 0.93
RHBDD3Q9Y3P4 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
RHBDD3Q9Y3P4 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RHBDD3Q9Y3P4 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RHBDD3Q9Y3P4 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RHBDD3Q9Y3P4 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RHBDD3Q9Y3P4 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RHBDD3Q9Y3P4 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RHBDD3Q9Y3P4 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
RHBDD3Q9Y3P4 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.84■□□□□ 0.93
RHBDD3Q9Y3P4 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RHBDD3Q9Y3P4 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
RHBDD3Q9Y3P4 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RHBDD3Q9Y3P4 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RHBDD3Q9Y3P4 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.83■□□□□ 0.93
RHBDD3Q9Y3P4 AC138932.3-201ENST00000567634 1902 ntBASIC20.83■□□□□ 0.93
RHBDD3Q9Y3P4 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RHBDD3Q9Y3P4 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.83■□□□□ 0.93
RHBDD3Q9Y3P4 AC022413.1-201ENST00000624602 984 ntBASIC20.83■□□□□ 0.93
RHBDD3Q9Y3P4 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.83■□□□□ 0.92
RHBDD3Q9Y3P4 AC022211.4-201ENST00000625094 2161 ntBASIC20.83■□□□□ 0.92
RHBDD3Q9Y3P4 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
RHBDD3Q9Y3P4 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
RHBDD3Q9Y3P4 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RHBDD3Q9Y3P4 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
RHBDD3Q9Y3P4 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RHBDD3Q9Y3P4 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
RHBDD3Q9Y3P4 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RHBDD3Q9Y3P4 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC20.82■□□□□ 0.92
RHBDD3Q9Y3P4 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RHBDD3Q9Y3P4 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RHBDD3Q9Y3P4 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.82■□□□□ 0.92
RHBDD3Q9Y3P4 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RHBDD3Q9Y3P4 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RHBDD3Q9Y3P4 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
RHBDD3Q9Y3P4 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.81■□□□□ 0.92
RHBDD3Q9Y3P4 CEP120-209ENST00000515110 606 ntTSL 3 BASIC20.81■□□□□ 0.92
RHBDD3Q9Y3P4 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms