Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC26.88■■□□□ 1.89
BLOC1S4Q9NUP1 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
BLOC1S4Q9NUP1 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
BLOC1S4Q9NUP1 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
BLOC1S4Q9NUP1 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
BLOC1S4Q9NUP1 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC26.88■■□□□ 1.89
BLOC1S4Q9NUP1 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
BLOC1S4Q9NUP1 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
BLOC1S4Q9NUP1 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
BLOC1S4Q9NUP1 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
BLOC1S4Q9NUP1 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC26.87■■□□□ 1.89
BLOC1S4Q9NUP1 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC26.86■■□□□ 1.89
BLOC1S4Q9NUP1 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC26.86■■□□□ 1.89
BLOC1S4Q9NUP1 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
BLOC1S4Q9NUP1 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
BLOC1S4Q9NUP1 AC133552.2-201ENST00000619106 1032 ntBASIC26.86■■□□□ 1.89
BLOC1S4Q9NUP1 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
BLOC1S4Q9NUP1 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
BLOC1S4Q9NUP1 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
BLOC1S4Q9NUP1 HYI-213ENST00000583037 1322 ntTSL 5 BASIC26.86■■□□□ 1.89
BLOC1S4Q9NUP1 AC020928.2-201ENST00000588717 2197 ntBASIC26.85■■□□□ 1.89
BLOC1S4Q9NUP1 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
BLOC1S4Q9NUP1 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC26.85■■□□□ 1.89
BLOC1S4Q9NUP1 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC26.85■■□□□ 1.89
BLOC1S4Q9NUP1 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC26.85■■□□□ 1.89
BLOC1S4Q9NUP1 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC26.85■■□□□ 1.89
BLOC1S4Q9NUP1 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
BLOC1S4Q9NUP1 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
BLOC1S4Q9NUP1 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
BLOC1S4Q9NUP1 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
BLOC1S4Q9NUP1 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
BLOC1S4Q9NUP1 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC26.84■■□□□ 1.89
BLOC1S4Q9NUP1 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC26.84■■□□□ 1.89
BLOC1S4Q9NUP1 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC26.83■■□□□ 1.89
BLOC1S4Q9NUP1 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
BLOC1S4Q9NUP1 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.88
BLOC1S4Q9NUP1 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC26.83■■□□□ 1.88
BLOC1S4Q9NUP1 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC26.83■■□□□ 1.88
BLOC1S4Q9NUP1 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC26.82■■□□□ 1.88
BLOC1S4Q9NUP1 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
BLOC1S4Q9NUP1 HES4-204ENST00000484667 667 ntTSL 3 BASIC26.82■■□□□ 1.88
BLOC1S4Q9NUP1 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC26.82■■□□□ 1.88
BLOC1S4Q9NUP1 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC26.82■■□□□ 1.88
BLOC1S4Q9NUP1 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
BLOC1S4Q9NUP1 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
BLOC1S4Q9NUP1 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC26.81■■□□□ 1.88
BLOC1S4Q9NUP1 U85056.1-201ENST00000616429 682 ntBASIC26.81■■□□□ 1.88
BLOC1S4Q9NUP1 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
BLOC1S4Q9NUP1 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
BLOC1S4Q9NUP1 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC26.8■■□□□ 1.88
BLOC1S4Q9NUP1 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.8■■□□□ 1.88
BLOC1S4Q9NUP1 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
BLOC1S4Q9NUP1 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
BLOC1S4Q9NUP1 AL592293.1-201ENST00000502889 1188 ntBASIC26.79■■□□□ 1.88
BLOC1S4Q9NUP1 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
BLOC1S4Q9NUP1 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
BLOC1S4Q9NUP1 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC26.79■■□□□ 1.88
BLOC1S4Q9NUP1 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC26.78■■□□□ 1.88
BLOC1S4Q9NUP1 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
BLOC1S4Q9NUP1 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
BLOC1S4Q9NUP1 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
BLOC1S4Q9NUP1 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC26.78■■□□□ 1.88
BLOC1S4Q9NUP1 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
BLOC1S4Q9NUP1 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
BLOC1S4Q9NUP1 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
BLOC1S4Q9NUP1 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
BLOC1S4Q9NUP1 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC26.77■■□□□ 1.88
BLOC1S4Q9NUP1 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC26.77■■□□□ 1.88
BLOC1S4Q9NUP1 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC26.77■■□□□ 1.88
BLOC1S4Q9NUP1 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
BLOC1S4Q9NUP1 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
BLOC1S4Q9NUP1 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC26.76■■□□□ 1.87
BLOC1S4Q9NUP1 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
BLOC1S4Q9NUP1 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
BLOC1S4Q9NUP1 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
BLOC1S4Q9NUP1 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
BLOC1S4Q9NUP1 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
BLOC1S4Q9NUP1 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.75■■□□□ 1.87
BLOC1S4Q9NUP1 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
BLOC1S4Q9NUP1 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
BLOC1S4Q9NUP1 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
BLOC1S4Q9NUP1 SPCS2P3-201ENST00000500401 656 ntBASIC26.75■■□□□ 1.87
BLOC1S4Q9NUP1 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
BLOC1S4Q9NUP1 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC26.75■■□□□ 1.87
BLOC1S4Q9NUP1 CEBPA-AS1-201ENST00000592982 2198 ntBASIC26.74■■□□□ 1.87
BLOC1S4Q9NUP1 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
BLOC1S4Q9NUP1 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
BLOC1S4Q9NUP1 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC26.74■■□□□ 1.87
BLOC1S4Q9NUP1 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
BLOC1S4Q9NUP1 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
BLOC1S4Q9NUP1 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
BLOC1S4Q9NUP1 AC097639.1-201ENST00000565519 1891 ntBASIC26.74■■□□□ 1.87
BLOC1S4Q9NUP1 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
BLOC1S4Q9NUP1 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
BLOC1S4Q9NUP1 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
BLOC1S4Q9NUP1 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
BLOC1S4Q9NUP1 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC26.73■■□□□ 1.87
BLOC1S4Q9NUP1 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
BLOC1S4Q9NUP1 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC26.72■■□□□ 1.87
BLOC1S4Q9NUP1 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC26.72■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms