Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ABCA4P78363 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
ABCA4P78363 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.84■□□□□ 0.93
ABCA4P78363 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
ABCA4P78363 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ABCA4P78363 BX664725.1-201ENST00000438252 379 ntBASIC20.83■□□□□ 0.93
ABCA4P78363 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ABCA4P78363 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
ABCA4P78363 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
ABCA4P78363 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
ABCA4P78363 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
ABCA4P78363 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.83■□□□□ 0.92
ABCA4P78363 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.83■□□□□ 0.92
ABCA4P78363 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.83■□□□□ 0.92
ABCA4P78363 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
ABCA4P78363 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
ABCA4P78363 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
ABCA4P78363 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
ABCA4P78363 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.82■□□□□ 0.92
ABCA4P78363 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ABCA4P78363 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.82■□□□□ 0.92
ABCA4P78363 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.82■□□□□ 0.92
ABCA4P78363 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
ABCA4P78363 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.82■□□□□ 0.92
ABCA4P78363 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.82■□□□□ 0.92
ABCA4P78363 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ABCA4P78363 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ABCA4P78363 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ABCA4P78363 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
ABCA4P78363 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
ABCA4P78363 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
ABCA4P78363 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
ABCA4P78363 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ABCA4P78363 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ABCA4P78363 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ABCA4P78363 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.8■□□□□ 0.92
ABCA4P78363 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
ABCA4P78363 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.79■□□□□ 0.92
ABCA4P78363 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
ABCA4P78363 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
ABCA4P78363 KRT18P10-201ENST00000388836 1287 ntBASIC20.79■□□□□ 0.92
ABCA4P78363 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.79■□□□□ 0.92
ABCA4P78363 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
ABCA4P78363 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
ABCA4P78363 MIR638-201ENST00000385237 100 ntBASIC20.78■□□□□ 0.92
ABCA4P78363 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.78■□□□□ 0.92
ABCA4P78363 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
ABCA4P78363 KRT18P24-201ENST00000344739 1156 ntBASIC20.78■□□□□ 0.92
ABCA4P78363 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
ABCA4P78363 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
ABCA4P78363 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
ABCA4P78363 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
ABCA4P78363 LONRF2P2-201ENST00000439212 571 ntBASIC20.76■□□□□ 0.91
ABCA4P78363 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
ABCA4P78363 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
ABCA4P78363 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ABCA4P78363 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.76■□□□□ 0.91
ABCA4P78363 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
ABCA4P78363 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
ABCA4P78363 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
ABCA4P78363 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
ABCA4P78363 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.75■□□□□ 0.91
ABCA4P78363 UNC93B8-201ENST00000511903 705 ntBASIC20.75■□□□□ 0.91
ABCA4P78363 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
ABCA4P78363 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ABCA4P78363 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
ABCA4P78363 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ABCA4P78363 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
ABCA4P78363 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ABCA4P78363 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ABCA4P78363 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ABCA4P78363 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ABCA4P78363 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ABCA4P78363 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.74■□□□□ 0.91
ABCA4P78363 AC131281.2-201ENST00000520478 145 ntBASIC20.74■□□□□ 0.91
ABCA4P78363 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.73■□□□□ 0.91
ABCA4P78363 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ABCA4P78363 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ABCA4P78363 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ABCA4P78363 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ABCA4P78363 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ABCA4P78363 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC20.73■□□□□ 0.91
ABCA4P78363 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
ABCA4P78363 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ABCA4P78363 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
ABCA4P78363 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC20.73■□□□□ 0.91
ABCA4P78363 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.73■□□□□ 0.91
ABCA4P78363 AC137630.3-201ENST00000607245 391 ntBASIC20.73■□□□□ 0.91
ABCA4P78363 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ABCA4P78363 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ABCA4P78363 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.72■□□□□ 0.91
ABCA4P78363 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ABCA4P78363 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.71■□□□□ 0.91
ABCA4P78363 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
ABCA4P78363 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.71■□□□□ 0.91
ABCA4P78363 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ABCA4P78363 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.71■□□□□ 0.91
ABCA4P78363 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.71■□□□□ 0.91
ABCA4P78363 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.71■□□□□ 0.91
ABCA4P78363 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms