Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PDLIM1O00151 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
PDLIM1O00151 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
PDLIM1O00151 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PDLIM1O00151 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PDLIM1O00151 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PDLIM1O00151 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
PDLIM1O00151 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
PDLIM1O00151 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PDLIM1O00151 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC22.7■■□□□ 1.22
PDLIM1O00151 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PDLIM1O00151 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
PDLIM1O00151 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PDLIM1O00151 DUX4L11-201ENST00000611504 1267 ntBASIC22.69■■□□□ 1.22
PDLIM1O00151 DUX4L12-201ENST00000614593 1267 ntBASIC22.69■■□□□ 1.22
PDLIM1O00151 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC22.69■■□□□ 1.22
PDLIM1O00151 DUX4L14-201ENST00000621227 1267 ntBASIC22.69■■□□□ 1.22
PDLIM1O00151 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PDLIM1O00151 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC22.69■■□□□ 1.22
PDLIM1O00151 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PDLIM1O00151 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PDLIM1O00151 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PDLIM1O00151 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PDLIM1O00151 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PDLIM1O00151 AL024507.2-201ENST00000606070 2574 ntBASIC22.67■■□□□ 1.22
PDLIM1O00151 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC22.67■■□□□ 1.22
PDLIM1O00151 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC22.67■■□□□ 1.22
PDLIM1O00151 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
PDLIM1O00151 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PDLIM1O00151 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.66■■□□□ 1.22
PDLIM1O00151 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PDLIM1O00151 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PDLIM1O00151 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PDLIM1O00151 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PDLIM1O00151 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
PDLIM1O00151 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PDLIM1O00151 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC22.65■■□□□ 1.22
PDLIM1O00151 MACF1-219ENST00000484793 834 ntTSL 2 BASIC22.65■■□□□ 1.22
PDLIM1O00151 PVT1-219ENST00000523427 938 ntTSL 3 BASIC22.65■■□□□ 1.22
PDLIM1O00151 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PDLIM1O00151 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PDLIM1O00151 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
PDLIM1O00151 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PDLIM1O00151 WHAMMP3-201ENST00000611636 1609 ntBASIC22.64■■□□□ 1.22
PDLIM1O00151 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PDLIM1O00151 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PDLIM1O00151 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC22.64■■□□□ 1.21
PDLIM1O00151 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC22.64■■□□□ 1.21
PDLIM1O00151 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC22.64■■□□□ 1.21
PDLIM1O00151 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC22.64■■□□□ 1.21
PDLIM1O00151 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PDLIM1O00151 CASK-201ENST00000378154 2494 ntTSL 5 BASIC22.64■■□□□ 1.21
PDLIM1O00151 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
PDLIM1O00151 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
PDLIM1O00151 RNF166-209ENST00000567844 633 ntTSL 5 BASIC22.63■■□□□ 1.21
PDLIM1O00151 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
PDLIM1O00151 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
PDLIM1O00151 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
PDLIM1O00151 DUX4L13-201ENST00000554103 1267 ntBASIC22.62■■□□□ 1.21
PDLIM1O00151 DUX4L15-201ENST00000611059 1267 ntBASIC22.62■■□□□ 1.21
PDLIM1O00151 DUX4L23-201ENST00000615195 1269 ntBASIC22.62■■□□□ 1.21
PDLIM1O00151 DUX4L24-201ENST00000617576 1269 ntBASIC22.62■■□□□ 1.21
PDLIM1O00151 DUX4L22-201ENST00000618238 1269 ntBASIC22.62■■□□□ 1.21
PDLIM1O00151 DUX4L20-201ENST00000619712 1269 ntBASIC22.62■■□□□ 1.21
PDLIM1O00151 DUX4L21-201ENST00000622058 1269 ntBASIC22.62■■□□□ 1.21
PDLIM1O00151 DUX4L10-201ENST00000622460 1267 ntBASIC22.62■■□□□ 1.21
PDLIM1O00151 DUX4L25-201ENST00000624915 1269 ntBASIC22.62■■□□□ 1.21
PDLIM1O00151 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PDLIM1O00151 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
PDLIM1O00151 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PDLIM1O00151 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PDLIM1O00151 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC22.61■■□□□ 1.21
PDLIM1O00151 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
PDLIM1O00151 AGPS-202ENST00000409888 815 ntTSL 4 BASIC22.61■■□□□ 1.21
PDLIM1O00151 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC22.61■■□□□ 1.21
PDLIM1O00151 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
PDLIM1O00151 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
PDLIM1O00151 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
PDLIM1O00151 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PDLIM1O00151 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PDLIM1O00151 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PDLIM1O00151 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC22.6■■□□□ 1.21
PDLIM1O00151 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PDLIM1O00151 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PDLIM1O00151 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PDLIM1O00151 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PDLIM1O00151 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
PDLIM1O00151 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
PDLIM1O00151 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PDLIM1O00151 MIR3648-2-201ENST00000581792 180 ntBASIC22.59■■□□□ 1.21
PDLIM1O00151 MIR3648-1-201ENST00000615959 180 ntBASIC22.59■■□□□ 1.21
PDLIM1O00151 CHML-204ENST00000638121 920 ntTSL 2 BASIC22.59■■□□□ 1.21
PDLIM1O00151 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.59■■□□□ 1.21
PDLIM1O00151 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
PDLIM1O00151 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PDLIM1O00151 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
PDLIM1O00151 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC22.58■■□□□ 1.21
PDLIM1O00151 CR559946.2-201ENST00000623684 991 ntBASIC22.58■■□□□ 1.21
PDLIM1O00151 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
PDLIM1O00151 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC22.58■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms