Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
TCRBV3S1A0A5B6 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC22.58■■□□□ 1.21
TCRBV3S1A0A5B6 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC22.58■■□□□ 1.21
TCRBV3S1A0A5B6 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC22.58■■□□□ 1.21
TCRBV3S1A0A5B6 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
TCRBV3S1A0A5B6 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC22.58■■□□□ 1.2
TCRBV3S1A0A5B6 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TCRBV3S1A0A5B6 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TCRBV3S1A0A5B6 SUZ12P1-203ENST00000578195 985 ntBASIC22.57■■□□□ 1.2
TCRBV3S1A0A5B6 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TCRBV3S1A0A5B6 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TCRBV3S1A0A5B6 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC22.57■■□□□ 1.2
TCRBV3S1A0A5B6 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
TCRBV3S1A0A5B6 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TCRBV3S1A0A5B6 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TCRBV3S1A0A5B6 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC22.57■■□□□ 1.2
TCRBV3S1A0A5B6 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
TCRBV3S1A0A5B6 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TCRBV3S1A0A5B6 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TCRBV3S1A0A5B6 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
TCRBV3S1A0A5B6 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
TCRBV3S1A0A5B6 RPS2-210ENST00000530225 765 ntTSL 2 BASIC22.56■■□□□ 1.2
TCRBV3S1A0A5B6 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TCRBV3S1A0A5B6 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TCRBV3S1A0A5B6 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC22.55■■□□□ 1.2
TCRBV3S1A0A5B6 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
TCRBV3S1A0A5B6 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
TCRBV3S1A0A5B6 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC22.55■■□□□ 1.2
TCRBV3S1A0A5B6 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TCRBV3S1A0A5B6 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC22.54■■□□□ 1.2
TCRBV3S1A0A5B6 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TCRBV3S1A0A5B6 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC22.54■■□□□ 1.2
TCRBV3S1A0A5B6 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC22.54■■□□□ 1.2
TCRBV3S1A0A5B6 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TCRBV3S1A0A5B6 DUX4L28-201ENST00000623687 678 ntBASIC22.54■■□□□ 1.2
TCRBV3S1A0A5B6 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TCRBV3S1A0A5B6 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TCRBV3S1A0A5B6 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TCRBV3S1A0A5B6 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TCRBV3S1A0A5B6 AC079834.2-201ENST00000609776 1949 ntBASIC22.53■■□□□ 1.2
TCRBV3S1A0A5B6 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TCRBV3S1A0A5B6 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TCRBV3S1A0A5B6 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TCRBV3S1A0A5B6 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.53■■□□□ 1.2
TCRBV3S1A0A5B6 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
TCRBV3S1A0A5B6 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TCRBV3S1A0A5B6 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
TCRBV3S1A0A5B6 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
TCRBV3S1A0A5B6 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
TCRBV3S1A0A5B6 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TCRBV3S1A0A5B6 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TCRBV3S1A0A5B6 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
TCRBV3S1A0A5B6 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
TCRBV3S1A0A5B6 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TCRBV3S1A0A5B6 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TCRBV3S1A0A5B6 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TCRBV3S1A0A5B6 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC22.5■■□□□ 1.19
TCRBV3S1A0A5B6 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TCRBV3S1A0A5B6 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
TCRBV3S1A0A5B6 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
TCRBV3S1A0A5B6 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TCRBV3S1A0A5B6 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TCRBV3S1A0A5B6 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TCRBV3S1A0A5B6 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TCRBV3S1A0A5B6 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TCRBV3S1A0A5B6 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TCRBV3S1A0A5B6 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC22.49■■□□□ 1.19
TCRBV3S1A0A5B6 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
TCRBV3S1A0A5B6 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
TCRBV3S1A0A5B6 AC141586.4-201ENST00000624558 1573 ntBASIC22.49■■□□□ 1.19
TCRBV3S1A0A5B6 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC22.49■■□□□ 1.19
TCRBV3S1A0A5B6 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC22.49■■□□□ 1.19
TCRBV3S1A0A5B6 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
TCRBV3S1A0A5B6 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TCRBV3S1A0A5B6 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
TCRBV3S1A0A5B6 SLC6A10P-202ENST00000431994 2058 ntBASIC22.48■■□□□ 1.19
TCRBV3S1A0A5B6 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC22.48■■□□□ 1.19
TCRBV3S1A0A5B6 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
TCRBV3S1A0A5B6 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
TCRBV3S1A0A5B6 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TCRBV3S1A0A5B6 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
TCRBV3S1A0A5B6 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TCRBV3S1A0A5B6 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC22.47■■□□□ 1.19
TCRBV3S1A0A5B6 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
TCRBV3S1A0A5B6 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TCRBV3S1A0A5B6 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TCRBV3S1A0A5B6 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC22.47■■□□□ 1.19
TCRBV3S1A0A5B6 CIB2-204ENST00000557846 934 ntTSL 3 BASIC22.47■■□□□ 1.19
TCRBV3S1A0A5B6 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC22.47■■□□□ 1.19
TCRBV3S1A0A5B6 DUSP8P5-201ENST00000422884 1815 ntBASIC22.47■■□□□ 1.19
TCRBV3S1A0A5B6 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TCRBV3S1A0A5B6 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TCRBV3S1A0A5B6 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
TCRBV3S1A0A5B6 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
TCRBV3S1A0A5B6 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TCRBV3S1A0A5B6 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TCRBV3S1A0A5B6 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
TCRBV3S1A0A5B6 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TCRBV3S1A0A5B6 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TCRBV3S1A0A5B6 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms