Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 RPL17-209ENST00000580387 827 ntTSL 521.15■□□□□ 0.984e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-223ENST00000618613 856 ntAPPRIS P1 TSL 321■□□□□ 0.954e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-221ENST00000615760 650 ntTSL 320.77■□□□□ 0.924e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-C18orf32-201ENST00000332968 948 ntTSL 5 BASIC14.39□□□□□ -0.114e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-210ENST00000581091 573 ntTSL 214.1□□□□□ -0.154e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-216ENST00000582935 469 ntTSL 214.1□□□□□ -0.154e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-220ENST00000615479 586 ntTSL 514.1□□□□□ -0.154e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-224ENST00000618619 747 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.294e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-222ENST00000617346 795 ntTSL 513.19□□□□□ -0.34e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-207ENST00000580210 705 ntTSL 2 BASIC11.91□□□□□ -0.54e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-205ENST00000579408 859 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.524e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-212ENST00000581373 584 ntTSL 2 BASIC10.66□□□□□ -0.74e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-213ENST00000581741 596 ntTSL 29.77□□□□□ -0.854e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC8.45□□□□□ -1.064e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-C18orf32-202ENST00000577910 1012 ntTSL 58.34□□□□□ -1.074e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-208ENST00000580261 669 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.074e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-217ENST00000583036 576 ntTSL 37.12□□□□□ -1.274e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-219ENST00000584364 523 ntTSL 25.34□□□□□ -1.554e-54■□□□□ 8.2
DDX55Q8NHQ9 RBM25-205ENST00000527432 3375 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.861e-14■□□□□ 8.2
DDX55Q8NHQ9 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.071e-14■□□□□ 8.2
DDX55Q8NHQ9 RBM25-207ENST00000528081 3008 ntTSL 26.32□□□□□ -1.41e-14■□□□□ 8.2
DDX55Q8NHQ9 RBM25-212ENST00000532683 6848 ntTSL 1 (best)6.23□□□□□ -1.411e-14■□□□□ 8.2
DDX55Q8NHQ9 RBM25-206ENST00000527449 3469 ntTSL 1 (best)3.37□□□□□ -1.871e-14■□□□□ 8.2
DDX55Q8NHQ9 TMBIM6-207ENST00000547013 428 ntTSL 26.72□□□□□ -1.335e-11■□□□□ 8.2
DDX55Q8NHQ9 TMBIM6-221ENST00000550040 952 ntTSL 26□□□□□ -1.455e-11■□□□□ 8.2
DDX55Q8NHQ9 TMBIM6-219ENST00000549471 484 ntTSL 25.55□□□□□ -1.525e-11■□□□□ 8.2
DDX55Q8NHQ9 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC34.55■■■■□ 3.121e-8■□□□□ 8.2
DDX55Q8NHQ9 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.61e-8■□□□□ 8.2
DDX55Q8NHQ9 A1BG-204ENST00000598345 475 ntTSL 1 (best)24.88■■□□□ 1.571e-8■□□□□ 8.2
DDX55Q8NHQ9 AC012313.3-201ENST00000600123 1765 ntTSL 1 (best)22.53■■□□□ 1.21e-8■□□□□ 8.2
DDX55Q8NHQ9 A1BG-202ENST00000595014 2301 ntTSL 221.68■■□□□ 1.061e-8■□□□□ 8.2
DDX55Q8NHQ9 A1BG-203ENST00000596924 2134 ntTSL 1 (best)19.99■□□□□ 0.791e-8■□□□□ 8.2
DDX55Q8NHQ9 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.661e-8■□□□□ 8.2
DDX55Q8NHQ9 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC15.85■□□□□ 0.137e-24■□□□□ 8.2
DDX55Q8NHQ9 CDCA8-201ENST00000327331 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31e-8■□□□□ 8.2
DDX55Q8NHQ9 TSC22D2-201ENST00000361875 11154 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.591e-8■□□□□ 8.2
DDX55Q8NHQ9 COPS6-204ENST00000426712 716 ntTSL 311.18□□□□□ -0.621e-8■□□□□ 8.2
DDX55Q8NHQ9 CDCA8-202ENST00000373055 2469 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.691e-8■□□□□ 8.2
DDX55Q8NHQ9 TSC22D2-203ENST00000466814 2093 ntAPPRIS ALT2 TSL 1 (best)8.38□□□□□ -1.071e-8■□□□□ 8.2
DDX55Q8NHQ9 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.321e-8■□□□□ 8.2
DDX55Q8NHQ9 CYB5B-206ENST00000568237 577 ntTSL 55.54□□□□□ -1.521e-8■□□□□ 8.2
DDX55Q8NHQ9 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.12e-7■□□□□ 8.2
DDX55Q8NHQ9 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.012e-7■□□□□ 8.2
DDX55Q8NHQ9 PMPCA-205ENST00000462616 3341 ntTSL 213.75□□□□□ -0.212e-7■□□□□ 8.2
DDX55Q8NHQ9 YWHAQ-205ENST00000474715 709 ntTSL 35.17□□□□□ -1.582e-7■□□□□ 8.2
DDX55Q8NHQ9 FGFR4-215ENST00000513423 445 ntTSL 216.42■□□□□ 0.223e-25■□□□□ 8.2
DDX55Q8NHQ9 CBX2-203ENST00000571484 567 ntTSL 1 (best)24.03■■□□□ 1.447e-10■□□□□ 8.2
DDX55Q8NHQ9 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC20.97■□□□□ 0.957e-10■□□□□ 8.2
DDX55Q8NHQ9 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC20.62■□□□□ 0.897e-10■□□□□ 8.2
DDX55Q8NHQ9 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.657e-10■□□□□ 8.2
DDX55Q8NHQ9 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.427e-10■□□□□ 8.2
DDX55Q8NHQ9 YY1-206ENST00000623799 2742 nt10.06□□□□□ -0.87e-10■□□□□ 8.2
DDX55Q8NHQ9 AC018521.1-202ENST00000641877 2655 ntBASIC13.55□□□□□ -0.241e-12■□□□□ 8.2
DDX55Q8NHQ9 PNPO-217ENST00000642017 3465 ntAPPRIS P1 BASIC13.51□□□□□ -0.251e-12■□□□□ 8.2
DDX55Q8NHQ9 PNPO-211ENST00000641323 3657 nt12.58□□□□□ -0.41e-12■□□□□ 8.2
DDX55Q8NHQ9 AC018521.1-201ENST00000582262 575 ntTSL 411.98□□□□□ -0.491e-12■□□□□ 8.2
DDX55Q8NHQ9 RPS29-208ENST00000557519 333 ntTSL 311.83□□□□□ -0.521e-12■□□□□ 8.2
DDX55Q8NHQ9 RPS29-204ENST00000554075 826 ntTSL 1 (best)9.96□□□□□ -0.821e-12■□□□□ 8.2
DDX55Q8NHQ9 RPS29-205ENST00000556230 624 ntTSL 1 (best)9.43□□□□□ -0.91e-12■□□□□ 8.2
DDX55Q8NHQ9 PNPO-207ENST00000584806 2940 ntTSL 38.2□□□□□ -1.11e-12■□□□□ 8.2
DDX55Q8NHQ9 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.175e-9■□□□□ 8.2
DDX55Q8NHQ9 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.115e-9■□□□□ 8.2
DDX55Q8NHQ9 TMBIM6-227ENST00000552699 2964 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.295e-9■□□□□ 8.2
DDX55Q8NHQ9 TMBIM6-201ENST00000267115 2836 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.725e-9■□□□□ 8.2
DDX55Q8NHQ9 TMBIM6-225ENST00000552370 882 ntAPPRIS P3 TSL 5 BASIC10.51□□□□□ -0.735e-9■□□□□ 8.2
DDX55Q8NHQ9 TMBIM6-209ENST00000547798 2494 ntAPPRIS ALT2 TSL 2 BASIC7.85□□□□□ -1.155e-9■□□□□ 8.2
DDX55Q8NHQ9 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC7.75□□□□□ -1.175e-9■□□□□ 8.2
DDX55Q8NHQ9 PDCD2-201ENST00000167218 1118 ntTSL 534.53■■■■□ 3.121e-10■□□□□ 8.2
DDX55Q8NHQ9 PDCD2-211ENST00000544336 1164 ntTSL 1 (best)34.35■■■■□ 3.091e-10■□□□□ 8.2
DDX55Q8NHQ9 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC34.35■■■■□ 3.091e-10■□□□□ 8.2
DDX55Q8NHQ9 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC32.53■■■□□ 2.81e-10■□□□□ 8.2
DDX55Q8NHQ9 PDCD2-214ENST00000545869 900 ntTSL 529.61■■■□□ 2.331e-10■□□□□ 8.2
DDX55Q8NHQ9 MVD-204ENST00000562741 217 ntTSL 226.65■■□□□ 1.861e-10■□□□□ 8.2
DDX55Q8NHQ9 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC24.32■■□□□ 1.481e-10■□□□□ 8.2
DDX55Q8NHQ9 MVD-210ENST00000565610 507 ntTSL 324.32■■□□□ 1.481e-10■□□□□ 8.2
DDX55Q8NHQ9 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC23.98■■□□□ 1.431e-10■□□□□ 8.2
DDX55Q8NHQ9 MVD-214ENST00000567064 758 ntTSL 322.65■■□□□ 1.221e-10■□□□□ 8.2
DDX55Q8NHQ9 MVD-208ENST00000563785 888 ntTSL 222.33■■□□□ 1.171e-10■□□□□ 8.2
DDX55Q8NHQ9 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.92■■□□□ 1.11e-10■□□□□ 8.2
DDX55Q8NHQ9 PDCD2-207ENST00000539212 445 ntTSL 321.58■■□□□ 1.051e-10■□□□□ 8.2
DDX55Q8NHQ9 MVD-217ENST00000569177 870 ntTSL 520.73■□□□□ 0.911e-10■□□□□ 8.2
DDX55Q8NHQ9 PDCD2-213ENST00000544866 710 ntTSL 520.33■□□□□ 0.851e-10■□□□□ 8.2
DDX55Q8NHQ9 MVD-207ENST00000563463 543 ntTSL 320.08■□□□□ 0.811e-10■□□□□ 8.2
DDX55Q8NHQ9 MVD-206ENST00000563170 904 ntTSL 320.03■□□□□ 0.81e-10■□□□□ 8.2
DDX55Q8NHQ9 MVD-215ENST00000568133 853 ntTSL 320.01■□□□□ 0.791e-10■□□□□ 8.2
DDX55Q8NHQ9 HDGF-207ENST00000477306 686 ntTSL 218.21■□□□□ 0.511e-10■□□□□ 8.2
DDX55Q8NHQ9 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.41e-10■□□□□ 8.2
DDX55Q8NHQ9 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC15.22■□□□□ 0.031e-10■□□□□ 8.2
DDX55Q8NHQ9 MAN2A2-230ENST00000561448 1443 ntTSL 214.1□□□□□ -0.151e-10■□□□□ 8.2
DDX55Q8NHQ9 TMBIM1-215ENST00000445635 1251 ntTSL 2 BASIC12.79□□□□□ -0.361e-10■□□□□ 8.2
DDX55Q8NHQ9 SEC31A-227ENST00000508502 3801 ntAPPRIS ALT1 TSL 1 (best) BASIC10.26□□□□□ -0.771e-10■□□□□ 8.2
DDX55Q8NHQ9 PDCD2-206ENST00000538195 560 ntTSL 58.47□□□□□ -1.051e-10■□□□□ 8.2
DDX55Q8NHQ9 ACSM3-207ENST00000562251 1931 ntTSL 28□□□□□ -1.131e-10■□□□□ 8.2
DDX55Q8NHQ9 ACSM3-211ENST00000567387 843 ntTSL 37.84□□□□□ -1.151e-10■□□□□ 8.2
DDX55Q8NHQ9 SEC31A-240ENST00000515062 597 ntTSL 36.33□□□□□ -1.41e-10■□□□□ 8.2
DDX55Q8NHQ9 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC6.11□□□□□ -1.431e-10■□□□□ 8.2
DDX55Q8NHQ9 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6□□□□□ -1.451e-10■□□□□ 8.2
DDX55Q8NHQ9 SEC31A-216ENST00000505479 631 ntTSL 25.99□□□□□ -1.451e-10■□□□□ 8.2
DDX55Q8NHQ9 ACSM3-210ENST00000567006 520 ntTSL 25.71□□□□□ -1.51e-10■□□□□ 8.2
DDX55Q8NHQ9 ACSM3-212ENST00000567711 438 ntTSL 35.4□□□□□ -1.541e-10■□□□□ 8.2
Retrieved 100 of 15,504 protein–RNA pairs in 416.2 ms