RNA–Protein interactions for RNA: ENST00000167218.9

PDCD2-201, Transcript of programmed cell death 2, humanhuman

TSL 5

Gene PDCD2, Length 1,118 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD2-201ENST00000167218 NISCHQ9Y2I1 1504 aa69.27■■■■■ 8.68
PDCD2-201ENST00000167218 CCDC180Q9P1Z9 1646 aa61.76■■■■■ 7.48
PDCD2-201ENST00000167218 ABCC9O60706 1549 aa60.96■■■■■ 7.35
PDCD2-201ENST00000167218 RB1CC1Q8TDY2 1594 aa58.37■■■■■ 6.94
PDCD2-201ENST00000167218 NACADO15069 1562 aa58.2■■■■■ 6.91
PDCD2-201ENST00000167218 DCAF8L2P0C7V8 631 aa58■■■■■ 6.88
PDCD2-201ENST00000167218 MYO15BQ96JP2 1530 aa57.72■■■■■ 6.83
PDCD2-201ENST00000167218 ZCCHC6Q5VYS8 1495 aaKnown RBP57.58■■■■■ 6.81
PDCD2-201ENST00000167218 DCAF1Q9Y4B6 1507 aa57.28■■■■■ 6.76
PDCD2-201ENST00000167218 UNC13AQ9UPW8 1703 aa57.14■■■■■ 6.74
PDCD2-201ENST00000167218 PABPN1Q86U42 306 aaKnown RBP eCLIP56.9■■■■■ 6.7
PDCD2-201ENST00000167218 BICRAQ9NZM4 1560 aa56.73■■■■■ 6.67
PDCD2-201ENST00000167218 DNAJC5BQ9UF47 199 aa56.54■■■■■ 6.64
PDCD2-201ENST00000167218 SCRIBQ14160 1630 aa56.31■■■■■ 6.61
PDCD2-201ENST00000167218 SHROOM4Q9ULL8 1493 aa55.99■■■■■ 6.55
PDCD2-201ENST00000167218 EIF4G1Q04637 1599 aaKnown RBP55.23■■■■■ 6.43
PDCD2-201ENST00000167218 CC2D2AQ9P2K1 1620 aa55.13■■■■■ 6.42
PDCD2-201ENST00000167218 CECR2Q9BXF3 1484 aa54.82■■■■■ 6.37
PDCD2-201ENST00000167218 SMARCA4P51532 1647 aa53.84■■■■■ 6.21
PDCD2-201ENST00000167218 NCAPD3P42695 1498 aa53.76■■■■■ 6.2
PDCD2-201ENST00000167218 ATAD2BQ9ULI0 1458 aa53.71■■■■■ 6.19
PDCD2-201ENST00000167218 BAZ1AQ9NRL2 1556 aaPredicted RBP53.68■■■■■ 6.18
PDCD2-201ENST00000167218 SMARCA2P51531 1590 aa53.55■■■■■ 6.16
PDCD2-201ENST00000167218 HMGXB3Q12766 1538 aa53.4■■■■■ 6.14
PDCD2-201ENST00000167218 MROH2BQ7Z745 1585 aa53.39■■■■■ 6.14
PDCD2-201ENST00000167218 PEG3Q9GZU2 1588 aa53.35■■■■■ 6.13
PDCD2-201ENST00000167218 BAZ1BQ9UIG0 1483 aaKnown RBP53.17■■■■■ 6.1
PDCD2-201ENST00000167218 WIZO95785 1651 aa52.78■■■■■ 6.04
PDCD2-201ENST00000167218 NESP48681 1621 aa52.63■■■■■ 6.02
PDCD2-201ENST00000167218 RSF1Q96T23 1441 aaPredicted RBP52.59■■■■■ 6.01
PDCD2-201ENST00000167218 ERCC6Q03468 1493 aa52.51■■■■■ 6
PDCD2-201ENST00000167218 LAMC3Q9Y6N6 1575 aa52.38■■■■■ 5.98
PDCD2-201ENST00000167218 CUX2O14529 1486 aa52.19■■■■■ 5.95
PDCD2-201ENST00000167218 TOP2AP11388 1531 aaKnown RBP52.15■■■■■ 5.94
PDCD2-201ENST00000167218 CADPSQ9ULU8 1353 aa52.14■■■■■ 5.94
PDCD2-201ENST00000167218 PDS5BQ9NTI5 1447 aa52.02■■■■■ 5.92
PDCD2-201ENST00000167218 KIF21AQ7Z4S6 1674 aa51.97■■■■■ 5.91
PDCD2-201ENST00000167218 THOC2Q8NI27 1593 aaKnown RBP51.93■■■■■ 5.9
PDCD2-201ENST00000167218 CFTRP13569 1480 aa51.73■■■■■ 5.87
PDCD2-201ENST00000167218 CCDC88BA6NC98 1476 aa51.58■■■■■ 5.85
PDCD2-201ENST00000167218 MRC2Q9UBG0 1479 aa51.54■■■■■ 5.84
PDCD2-201ENST00000167218 FANCD2Q9BXW9 1451 aa51.53■■■■■ 5.84
PDCD2-201ENST00000167218 CEP164Q9UPV0 1460 aa51.48■■■■■ 5.83
PDCD2-201ENST00000167218 WDR62O43379 1518 aa51.41■■■■■ 5.82
PDCD2-201ENST00000167218 PRDM2Q13029 1718 aa51.27■■■■■ 5.8
PDCD2-201ENST00000167218 DNAJC5Q9H3Z4 198 aa51.27■■■■■ 5.8
PDCD2-201ENST00000167218 URB2Q14146 1524 aaKnown RBP51.08■■■■■ 5.77
PDCD2-201ENST00000167218 SUPT5HO00267 1087 aaKnown RBP50.79■■■■■ 5.72
PDCD2-201ENST00000167218 TOPBP1Q92547 1522 aa50.67■■■■■ 5.7
PDCD2-201ENST00000167218 ABCC8Q09428 1581 aa50.58■■■■■ 5.69
PDCD2-201ENST00000167218 DNMBPQ6XZF7 1577 aa50.54■■■■■ 5.68
PDCD2-201ENST00000167218 IFT140Q96RY7 1462 aa50.45■■■■■ 5.67
PDCD2-201ENST00000167218 ZNF608Q9ULD9 1512 aaPredicted RBP50.31■■■■■ 5.65
PDCD2-201ENST00000167218 POLA1P09884 1462 aaPredicted RBP50.2■■■■■ 5.63
PDCD2-201ENST00000167218 TARBP1Q13395 1621 aaKnown RBP50.18■■■■■ 5.62
PDCD2-201ENST00000167218 CUX1P39880 1505 aa50.11■■■■■ 5.61
PDCD2-201ENST00000167218 EIF4G3O43432 1585 aaKnown RBP50.04■■■■■ 5.6
PDCD2-201ENST00000167218 RAD54L2Q9Y4B4 1467 aa50.01■■■■■ 5.6
PDCD2-201ENST00000167218 FGD5Q6ZNL6 1462 aa49.99■■■■■ 5.59
PDCD2-201ENST00000167218 SOGA1O94964 1423 aa49.97■■■■■ 5.59
PDCD2-201ENST00000167218 AQRO60306 1485 aaKnown RBP eCLIP49.95■■■■■ 5.599e-7■■■■■ 36.8
PDCD2-201ENST00000167218 OSCARQ8IYS5 282 aa49.95■■■■■ 5.59
PDCD2-201ENST00000167218 TDRD9Q8NDG6 1382 aaKnown RBP49.77■■■■■ 5.56
PDCD2-201ENST00000167218 WDR97A6NE52 1622 aa49.68■■■■■ 5.54
PDCD2-201ENST00000167218 WRNQ14191 1432 aaPredicted RBP eCLIP49.55■■■■■ 5.52
PDCD2-201ENST00000167218 CHD1O14646 1710 aa49.53■■■■■ 5.52
PDCD2-201ENST00000167218 TOP2BQ02880 1626 aa49.52■■■■■ 5.52
PDCD2-201ENST00000167218 BIVM-ERCC5R4GMW8 1640 aa49.52■■■■■ 5.52
PDCD2-201ENST00000167218 ABCA10Q8WWZ4 1543 aa49.5■■■■■ 5.51
PDCD2-201ENST00000167218 SYNJ1O43426 1573 aa49.49■■■■■ 5.51
PDCD2-201ENST00000167218 SNAPC4Q5SXM2 1469 aa49.44■■■■■ 5.51
PDCD2-201ENST00000167218 GRIN2BQ13224 1484 aa49.44■■■■■ 5.5
PDCD2-201ENST00000167218 FBLN2P98095 1184 aa49.38■■■■■ 5.5
PDCD2-201ENST00000167218 GAPVD1Q14C86 1478 aa49.37■■■■■ 5.49
PDCD2-201ENST00000167218 MAGI1Q96QZ7 1491 aaPredicted RBP49.36■■■■■ 5.49
PDCD2-201ENST00000167218 ABCA5Q8WWZ7 1642 aa49.34■■■■■ 5.49
PDCD2-201ENST00000167218 PBRM1Q86U86 1689 aa49.3■■■■■ 5.48
PDCD2-201ENST00000167218 TRIM41Q8WV44 630 aa49.27■■■■■ 5.48
PDCD2-201ENST00000167218 RIMBP3CA6NJZ7 1639 aa49.23■■■■■ 5.47
PDCD2-201ENST00000167218 RIMBP3BA6NNM3 1639 aa49.23■■■■■ 5.47
PDCD2-201ENST00000167218 RIMBP3Q9UFD9 1639 aa49.23■■■■■ 5.47
PDCD2-201ENST00000167218 CHMP7Q8WUX9 453 aaPredicted RBP49.18■■■■■ 5.46
PDCD2-201ENST00000167218 SYNJ2O15056 1496 aa49.18■■■■■ 5.46
PDCD2-201ENST00000167218 ARHGEF11O15085 1522 aa49.15■■■■■ 5.46
PDCD2-201ENST00000167218 CLASP1Q7Z460 1538 aa49.01■■■■■ 5.44
PDCD2-201ENST00000167218 ADAMTS12P58397 1594 aa48.89■■■■■ 5.42
PDCD2-201ENST00000167218 ERICH3Q5RHP9 1530 aa48.87■■■■■ 5.41
PDCD2-201ENST00000167218 GRIN2AQ12879 1464 aa48.81■■■■■ 5.4
PDCD2-201ENST00000167218 FHAD1B1AJZ9 1412 aa48.78■■■■■ 5.4
PDCD2-201ENST00000167218 ARAP1Q96P48 1450 aa48.74■■■■■ 5.39
PDCD2-201ENST00000167218 CYB5RLQ6IPT4 315 aa48.72■■■■■ 5.39
PDCD2-201ENST00000167218 NUP160Q12769 1436 aa48.65■■■■■ 5.38
PDCD2-201ENST00000167218 CEP170Q5SW79 1584 aa48.62■■■■■ 5.37
PDCD2-201ENST00000167218 KIF27Q86VH2 1401 aa48.53■■■■■ 5.36
PDCD2-201ENST00000167218 IGF1RP08069 1367 aa48.48■■■■■ 5.35
PDCD2-201ENST00000167218 SHROOM2Q13796 1616 aa48.34■■■■■ 5.33
PDCD2-201ENST00000167218 ERCC6L2Q5T890 1561 aa48.32■■■■■ 5.33
PDCD2-201ENST00000167218 CUL7Q14999 1698 aa48.3■■■■■ 5.32
PDCD2-201ENST00000167218 RUSC2Q8N2Y8 1516 aa48.18■■■■■ 5.3
PDCD2-201ENST00000167218 CARMIL1Q5VZK9 1371 aa48.13■■■■■ 5.3
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms