RNA–Protein interactions for RNA: ENST00000541970.5

PDCD2-208, Transcript of programmed cell death 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDCD2, Length 3,378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD2-208ENST00000541970 NISCHQ9Y2I1 1504 aa32.89■■■□□ 2.86
PDCD2-208ENST00000541970 SHROOM4Q9ULL8 1493 aa29.31■■■□□ 2.28
PDCD2-208ENST00000541970 DCAF8L2P0C7V8 631 aa29.3■■■□□ 2.28
PDCD2-208ENST00000541970 SUPT5HO00267 1087 aaKnown RBP28.78■■■□□ 2.2
PDCD2-208ENST00000541970 HRCP23327 699 aa27.95■■■□□ 2.07
PDCD2-208ENST00000541970 PPARGC1BQ86YN6 1023 aaKnown RBP27.76■■■□□ 2.03
PDCD2-208ENST00000541970 PCGF6Q9BYE7 350 aa27.72■■■□□ 2.03
PDCD2-208ENST00000541970 ZCCHC6Q5VYS8 1495 aaKnown RBP27.6■■■□□ 2.01
PDCD2-208ENST00000541970 CCDC180Q9P1Z9 1646 aa27.46■■□□□ 1.99
PDCD2-208ENST00000541970 CHIC1Q5VXU3 224 aa27.13■■□□□ 1.93
PDCD2-208ENST00000541970 PELP1Q8IZL8 1130 aaKnown RBP27.1■■□□□ 1.93
PDCD2-208ENST00000541970 EHMT2Q96KQ7 1210 aa27.1■■□□□ 1.93
PDCD2-208ENST00000541970 ABCC9O60706 1549 aa27■■□□□ 1.91
PDCD2-208ENST00000541970 MYO15BQ96JP2 1530 aa26.94■■□□□ 1.9
PDCD2-208ENST00000541970 FAM9AQ8IZU1 332 aaPredicted RBP26.84■■□□□ 1.89
PDCD2-208ENST00000541970 LOC105371045A0A1W2PR82 267 aa26.81■■□□□ 1.88
PDCD2-208ENST00000541970 SCRIBQ14160 1630 aa26.67■■□□□ 1.86
PDCD2-208ENST00000541970 SCAF1Q9H7N4 1312 aaKnown RBP26.64■■□□□ 1.86
PDCD2-208ENST00000541970 TRIM41Q8WV44 630 aa26.5■■□□□ 1.83
PDCD2-208ENST00000541970 TRIM26Q12899 539 aaPredicted RBP26.42■■□□□ 1.82
PDCD2-208ENST00000541970 DCAF1Q9Y4B6 1507 aa26.38■■□□□ 1.81
PDCD2-208ENST00000541970 PABPN1Q86U42 306 aaKnown RBP eCLIP26.23■■□□□ 1.79
PDCD2-208ENST00000541970 RSF1Q96T23 1441 aaPredicted RBP26.18■■□□□ 1.78
PDCD2-208ENST00000541970 ZEB1P37275 1124 aaPredicted RBP26.18■■□□□ 1.78
PDCD2-208ENST00000541970 CECR2Q9BXF3 1484 aa26.07■■□□□ 1.76
PDCD2-208ENST00000541970 TTBK1Q5TCY1 1321 aaPredicted RBP26.06■■□□□ 1.76
PDCD2-208ENST00000541970 MYT1Q01538 1121 aa26.01■■□□□ 1.75
PDCD2-208ENST00000541970 NEUROD1Q13562 356 aa25.94■■□□□ 1.74
PDCD2-208ENST00000541970 GTF3C3Q9Y5Q9 886 aa25.92■■□□□ 1.74
PDCD2-208ENST00000541970 ACIN1Q9UKV3 1341 aaKnown RBP25.91■■□□□ 1.74
PDCD2-208ENST00000541970 RB1CC1Q8TDY2 1594 aa25.84■■□□□ 1.73
PDCD2-208ENST00000541970 NACADO15069 1562 aa25.81■■□□□ 1.72
PDCD2-208ENST00000541970 MROH2BQ7Z745 1585 aa25.77■■□□□ 1.72
PDCD2-208ENST00000541970 CENPBP07199 599 aaPredicted RBP25.73■■□□□ 1.71
PDCD2-208ENST00000541970 RANGAP1P46060 587 aaPredicted RBP25.7■■□□□ 1.7
PDCD2-208ENST00000541970 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.64■■□□□ 1.69
PDCD2-208ENST00000541970 CCER1Q8TC90 406 aaPredicted RBP25.61■■□□□ 1.69
PDCD2-208ENST00000541970 YTHDC1Q96MU7 727 aaKnown RBP25.58■■□□□ 1.69
PDCD2-208ENST00000541970 WIZO95785 1651 aa25.58■■□□□ 1.68
PDCD2-208ENST00000541970 UBTFP17480 764 aaKnown RBP25.54■■□□□ 1.68
PDCD2-208ENST00000541970 DIEXFQ68CQ4 756 aaKnown RBP25.53■■□□□ 1.68
PDCD2-208ENST00000541970 BAZ1AQ9NRL2 1556 aaPredicted RBP25.28■■□□□ 1.64
PDCD2-208ENST00000541970 ABCC8Q09428 1581 aa25.22■■□□□ 1.63
PDCD2-208ENST00000541970 CCDC88BA6NC98 1476 aa25.16■■□□□ 1.62
PDCD2-208ENST00000541970 CSRNP3Q8WYN3 585 aa25.07■■□□□ 1.6
PDCD2-208ENST00000541970 SOGA1O94964 1423 aa25.04■■□□□ 1.6
PDCD2-208ENST00000541970 SMARCA4P51532 1647 aa25.01■■□□□ 1.59
PDCD2-208ENST00000541970 APLP2Q06481 763 aa24.96■■□□□ 1.59
PDCD2-208ENST00000541970 TOP2AP11388 1531 aaKnown RBP24.92■■□□□ 1.58
PDCD2-208ENST00000541970 HNRNPUL2Q1KMD3 747 aaKnown RBP24.92■■□□□ 1.58
PDCD2-208ENST00000541970 RUSC2Q8N2Y8 1516 aa24.89■■□□□ 1.57
PDCD2-208ENST00000541970 ZNF316A6NFI3 1004 aaPredicted RBP24.87■■□□□ 1.57
PDCD2-208ENST00000541970 MIER1Q8N108 512 aa24.85■■□□□ 1.57
PDCD2-208ENST00000541970 UNC13AQ9UPW8 1703 aa24.83■■□□□ 1.57
PDCD2-208ENST00000541970 SMARCA2P51531 1590 aa24.82■■□□□ 1.56
PDCD2-208ENST00000541970 WRNQ14191 1432 aaPredicted RBP eCLIP24.79■■□□□ 1.56
PDCD2-208ENST00000541970 BAZ1BQ9UIG0 1483 aaKnown RBP24.79■■□□□ 1.56
PDCD2-208ENST00000541970 CEP162Q5TB80 1403 aa24.76■■□□□ 1.55
PDCD2-208ENST00000541970 BICRAQ9NZM4 1560 aa24.72■■□□□ 1.55
PDCD2-208ENST00000541970 ATP1B4Q9UN42 357 aaPredicted RBP24.7■■□□□ 1.54
PDCD2-208ENST00000541970 BCL11AQ9H165 835 aa24.67■■□□□ 1.54
PDCD2-208ENST00000541970 ATAD2BQ9ULI0 1458 aa24.65■■□□□ 1.54
PDCD2-208ENST00000541970 ITGAEP38570 1179 aa24.62■■□□□ 1.53
PDCD2-208ENST00000541970 TNIKQ9UKE5 1360 aa24.53■■□□□ 1.52
PDCD2-208ENST00000541970 ANP32EQ9BTT0 268 aa24.5■■□□□ 1.51
PDCD2-208ENST00000541970 GOLGA3Q08378 1498 aa24.48■■□□□ 1.51
PDCD2-208ENST00000541970 P3H3Q8IVL6 736 aa24.45■■□□□ 1.5
PDCD2-208ENST00000541970 SUPT16HQ9Y5B9 1047 aaKnown RBP24.45■■□□□ 1.5
PDCD2-208ENST00000541970 CLIP1P30622 1438 aa24.45■■□□□ 1.5
PDCD2-208ENST00000541970 BCANQ96GW7 911 aa24.43■■□□□ 1.5
PDCD2-208ENST00000541970 EIF4G1Q04637 1599 aaKnown RBP24.41■■□□□ 1.5
PDCD2-208ENST00000541970 EEA1Q15075 1411 aa24.39■■□□□ 1.49
PDCD2-208ENST00000541970 TSHZ2Q9NRE2 1034 aa24.37■■□□□ 1.49
PDCD2-208ENST00000541970 SYNJ1O43426 1573 aa24.36■■□□□ 1.49
PDCD2-208ENST00000541970 RAPGEF2Q9Y4G8 1499 aa24.33■■□□□ 1.49
PDCD2-208ENST00000541970 CEP164Q9UPV0 1460 aa24.31■■□□□ 1.48
PDCD2-208ENST00000541970 KANK4Q5T7N3 995 aaPredicted RBP24.15■■□□□ 1.46
PDCD2-208ENST00000541970 FAM50AQ14320 339 aaKnown RBP24.09■■□□□ 1.45
PDCD2-208ENST00000541970 KIF27Q86VH2 1401 aa24.07■■□□□ 1.44
PDCD2-208ENST00000541970 PEG3Q9GZU2 1588 aa24.07■■□□□ 1.44
PDCD2-208ENST00000541970 VPS8Q8N3P4 1428 aa24.05■■□□□ 1.44
PDCD2-208ENST00000541970 CUX2O14529 1486 aa24.03■■□□□ 1.44
PDCD2-208ENST00000541970 ARID3CA6NKF2 412 aa24.03■■□□□ 1.44
PDCD2-208ENST00000541970 NCAPD3P42695 1498 aa24.03■■□□□ 1.44
PDCD2-208ENST00000541970 FKBP8Q14318 412 aa24.02■■□□□ 1.44
PDCD2-208ENST00000541970 CLSPNQ9HAW4 1339 aa24.02■■□□□ 1.44
PDCD2-208ENST00000541970 DNAJC5BQ9UF47 199 aa23.98■■□□□ 1.43
PDCD2-208ENST00000541970 KCNH8Q96L42 1107 aa23.93■■□□□ 1.42
PDCD2-208ENST00000541970 CUX1P39880 1505 aa23.92■■□□□ 1.42
PDCD2-208ENST00000541970 CADPSQ9ULU8 1353 aa23.92■■□□□ 1.42
PDCD2-208ENST00000541970 ERICH6Q7L0X2 663 aa23.89■■□□□ 1.42
PDCD2-208ENST00000541970 NEFLP07196 543 aa23.88■■□□□ 1.41
PDCD2-208ENST00000541970 TOP2BQ02880 1626 aa23.86■■□□□ 1.41
PDCD2-208ENST00000541970 CARMIL1Q5VZK9 1371 aa23.86■■□□□ 1.41
PDCD2-208ENST00000541970 RBM19Q9Y4C8 960 aaKnown RBP23.85■■□□□ 1.41
PDCD2-208ENST00000541970 KIF21BO75037 1637 aa23.85■■□□□ 1.41
PDCD2-208ENST00000541970 CFTRP13569 1480 aa23.84■■□□□ 1.41
PDCD2-208ENST00000541970 NESP48681 1621 aa23.8■■□□□ 1.4
PDCD2-208ENST00000541970 IGF1RP08069 1367 aa23.77■■□□□ 1.4
PDCD2-208ENST00000541970 HMGXB3Q12766 1538 aa23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 331.1 ms