Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIMS3P0CW19 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIMS3P0CW19 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.5■■□□□ 1.03
LIMS3P0CW19 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIMS3P0CW19 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIMS3P0CW19 AP006261.1-201ENST00000584783 668 ntBASIC21.5■■□□□ 1.03
LIMS3P0CW19 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LIMS3P0CW19 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
LIMS3P0CW19 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.49■■□□□ 1.03
LIMS3P0CW19 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.49■■□□□ 1.03
LIMS3P0CW19 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.49■■□□□ 1.03
LIMS3P0CW19 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
LIMS3P0CW19 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC21.48■■□□□ 1.03
LIMS3P0CW19 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.48■■□□□ 1.03
LIMS3P0CW19 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
LIMS3P0CW19 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LIMS3P0CW19 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
LIMS3P0CW19 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LIMS3P0CW19 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
LIMS3P0CW19 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.47■■□□□ 1.03
LIMS3P0CW19 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LIMS3P0CW19 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LIMS3P0CW19 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.46■■□□□ 1.03
LIMS3P0CW19 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LIMS3P0CW19 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LIMS3P0CW19 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.46■■□□□ 1.03
LIMS3P0CW19 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LIMS3P0CW19 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC21.46■■□□□ 1.03
LIMS3P0CW19 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LIMS3P0CW19 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
LIMS3P0CW19 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LIMS3P0CW19 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LIMS3P0CW19 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LIMS3P0CW19 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
LIMS3P0CW19 NRG1-221ENST00000614767 762 ntTSL 5 BASIC21.45■■□□□ 1.02
LIMS3P0CW19 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LIMS3P0CW19 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
LIMS3P0CW19 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC21.44■■□□□ 1.02
LIMS3P0CW19 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.44■■□□□ 1.02
LIMS3P0CW19 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LIMS3P0CW19 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LIMS3P0CW19 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
LIMS3P0CW19 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC21.44■■□□□ 1.02
LIMS3P0CW19 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.44■■□□□ 1.02
LIMS3P0CW19 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LIMS3P0CW19 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LIMS3P0CW19 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LIMS3P0CW19 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
LIMS3P0CW19 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LIMS3P0CW19 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LIMS3P0CW19 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LIMS3P0CW19 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.43■■□□□ 1.02
LIMS3P0CW19 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
LIMS3P0CW19 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LIMS3P0CW19 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LIMS3P0CW19 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LIMS3P0CW19 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LIMS3P0CW19 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
LIMS3P0CW19 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
LIMS3P0CW19 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.42■■□□□ 1.02
LIMS3P0CW19 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC21.42■■□□□ 1.02
LIMS3P0CW19 AC021231.2-201ENST00000594613 730 ntBASIC21.42■■□□□ 1.02
LIMS3P0CW19 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LIMS3P0CW19 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LIMS3P0CW19 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.41■■□□□ 1.02
LIMS3P0CW19 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LIMS3P0CW19 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
LIMS3P0CW19 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
LIMS3P0CW19 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LIMS3P0CW19 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LIMS3P0CW19 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LIMS3P0CW19 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
LIMS3P0CW19 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
LIMS3P0CW19 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.41■■□□□ 1.02
LIMS3P0CW19 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LIMS3P0CW19 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LIMS3P0CW19 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LIMS3P0CW19 LINC01124-201ENST00000409786 2117 ntBASIC21.4■■□□□ 1.02
LIMS3P0CW19 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LIMS3P0CW19 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC21.4■■□□□ 1.02
LIMS3P0CW19 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.4■■□□□ 1.02
LIMS3P0CW19 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
LIMS3P0CW19 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
LIMS3P0CW19 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
LIMS3P0CW19 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
LIMS3P0CW19 AC044849.2-201ENST00000606596 710 ntBASIC21.39■■□□□ 1.01
LIMS3P0CW19 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LIMS3P0CW19 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.39■■□□□ 1.01
LIMS3P0CW19 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
LIMS3P0CW19 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.39■■□□□ 1.01
LIMS3P0CW19 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LIMS3P0CW19 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
LIMS3P0CW19 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.38■■□□□ 1.01
LIMS3P0CW19 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
LIMS3P0CW19 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LIMS3P0CW19 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LIMS3P0CW19 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LIMS3P0CW19 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.37■■□□□ 1.01
LIMS3P0CW19 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LIMS3P0CW19 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms