Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 CDK16-221ENST00000523543 533 ntTSL 29.86□□□□□ -0.832e-7■■■■■ 28.4
SMNDC1O75940 ARID4A-205ENST00000424658 582 ntTSL 222.49■■□□□ 1.194e-8■■■■■ 28.3
SMNDC1O75940 ARID4A-207ENST00000431612 697 ntTSL 1 (best)19.58■□□□□ 0.724e-8■■■■■ 28.3
SMNDC1O75940 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.75■□□□□ 0.594e-15■■■■■ 28.3
SMNDC1O75940 ARID4A-208ENST00000445108 965 ntTSL 317.84■□□□□ 0.454e-8■■■■■ 28.3
SMNDC1O75940 MVD-205ENST00000562981 537 ntTSL 215.24■□□□□ 0.034e-8■■■■■ 28.3
SMNDC1O75940 AKNA-209ENST00000492875 3894 ntTSL 213.35□□□□□ -0.274e-15■■■■■ 28.3
SMNDC1O75940 ARID4A-206ENST00000431317 5783 ntTSL 5 BASIC13.17□□□□□ -0.34e-8■■■■■ 28.3
SMNDC1O75940 ARID4A-202ENST00000355431 5891 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.344e-8■■■■■ 28.3
SMNDC1O75940 CISD1-201ENST00000333926 2479 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.564e-8■■■■■ 28.3
SMNDC1O75940 MVD-202ENST00000561895 499 ntTSL 211.28□□□□□ -0.64e-8■■■■■ 28.3
SMNDC1O75940 ARID4A-201ENST00000348476 5562 ntTSL 5 BASIC9.22□□□□□ -0.934e-8■■■■■ 28.3
SMNDC1O75940 CISD1-202ENST00000464703 698 ntTSL 57.32□□□□□ -1.244e-8■■■■■ 28.3
SMNDC1O75940 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.82□□□□□ -1.484e-8■■■■■ 28.3
SMNDC1O75940 SRSF1-206ENST00000583741 1465 ntTSL 518.46■□□□□ 0.541e-8■■■■■ 28.3
SMNDC1O75940 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.21■□□□□ 0.191e-8■■■■■ 28.3
SMNDC1O75940 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.08■□□□□ 0.161e-8■■■■■ 28.3
SMNDC1O75940 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.161e-8■■■■■ 28.3
SMNDC1O75940 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC14.19□□□□□ -0.141e-8■■■■■ 28.3
SMNDC1O75940 SRSF1-204ENST00000581979 1720 ntTSL 1 (best)11.46□□□□□ -0.581e-8■■■■■ 28.3
SMNDC1O75940 EIF4A1-206ENST00000577929 696 ntTSL 217.11■□□□□ 0.331e-6■■■■■ 28.2
SMNDC1O75940 DDX39B-201ENST00000376177 1529 ntTSL 5 BASIC10.74□□□□□ -0.691e-8■■■■■ 28.1
SMNDC1O75940 ABHD16A-216ENST00000498420 1137 ntTSL 518.73■□□□□ 0.593e-12■■■■■ 28.1
SMNDC1O75940 SGSM3-201ENST00000248929 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.225e-7■■■■■ 28.1
SMNDC1O75940 SGSM3-213ENST00000485962 2973 ntTSL 512.77□□□□□ -0.365e-7■■■■■ 28.1
SMNDC1O75940 AL022238.4-201ENST00000639722 4563 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.455e-7■■■■■ 28.1
SMNDC1O75940 SGSM3-209ENST00000478085 4218 ntTSL 211.67□□□□□ -0.545e-7■■■■■ 28.1
SMNDC1O75940 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.343e-6■■■■■ 28
SMNDC1O75940 ANAPC2-203ENST00000483432 793 ntTSL 216.03■□□□□ 0.163e-6■■■■■ 28
SMNDC1O75940 NOP56-208ENST00000467857 735 ntTSL 29.02□□□□□ -0.972e-23■■■■■ 27.9
SMNDC1O75940 SNORD57-201ENST00000448188 72 ntBASIC0.22□□□□□ -2.371e-323■■■■■ 27.9
SMNDC1O75940 NCL-208ENST00000466274 671 ntTSL 27.74□□□□□ -1.172e-89■■■■■ 27.9
SMNDC1O75940 SNORD20-201ENST00000384550 80 ntBASIC4.02□□□□□ -1.772e-89■■■■■ 27.9
SMNDC1O75940 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.032e-27■■■■■ 27.9
SMNDC1O75940 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC8.21□□□□□ -1.12e-27■■■■■ 27.9
SMNDC1O75940 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.392e-27■■■■■ 27.9
SMNDC1O75940 RPS15A-213ENST00000576436 2190 ntTSL 4 BASIC13.82□□□□□ -0.28e-11■■■■■ 27.8
SMNDC1O75940 snoU2_19.4-201ENST00000364329 80 ntBASIC3.99□□□□□ -1.772e-60■■■■■ 27.8
SMNDC1O75940 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.622e-6■■■■■ 27.8
SMNDC1O75940 DNAJC11-204ENST00000451196 1357 ntTSL 1 (best)17.72■□□□□ 0.438e-12■■■■■ 27.7
SMNDC1O75940 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.48■□□□□ 0.398e-12■■■■■ 27.7
SMNDC1O75940 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.353e-8■■■■■ 27.7
SMNDC1O75940 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.98■□□□□ 0.313e-8■■■■■ 27.7
SMNDC1O75940 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.06■□□□□ 0.163e-8■■■■■ 27.7
SMNDC1O75940 INS-IGF2-201ENST00000356578 1706 ntTSL 515.74■□□□□ 0.113e-8■■■■■ 27.7
SMNDC1O75940 DNAJC11-202ENST00000377577 3311 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.288e-12■■■■■ 27.7
SMNDC1O75940 INS-IGF2-205ENST00000641326 2861 ntAPPRIS P1 BASIC12.63□□□□□ -0.393e-8■■■■■ 27.7
SMNDC1O75940 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.393e-8■■■■■ 27.7
SMNDC1O75940 DNAJC11-210ENST00000473993 755 ntTSL 511.18□□□□□ -0.628e-12■■■■■ 27.7
SMNDC1O75940 DNAJC11-203ENST00000426784 975 ntTSL 36.7□□□□□ -1.348e-12■■■■■ 27.7
SMNDC1O75940 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.123e-6■■■■■ 27.6
SMNDC1O75940 GLI4-208ENST00000522033 615 ntTSL 220.68■□□□□ 0.99e-7■■■■■ 27.6
SMNDC1O75940 GLI4-211ENST00000523812 2333 nt20.32■□□□□ 0.849e-7■■■■■ 27.6
SMNDC1O75940 HMCN1-204ENST00000485744 1884 ntTSL 29.1□□□□□ -0.951e-20■■■■■ 27.6
SMNDC1O75940 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.621e-20■■■■■ 27.6
SMNDC1O75940 RANBP1-211ENST00000448394 688 ntTSL 212.97□□□□□ -0.333e-10■■■■■ 27.5
SMNDC1O75940 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.35e-6■■■■■ 27.5
SMNDC1O75940 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.155e-6■■■■■ 27.5
SMNDC1O75940 TMEM259-205ENST00000586704 2538 ntTSL 518.74■□□□□ 0.595e-6■■■■■ 27.5
SMNDC1O75940 RPS13-207ENST00000531008 594 ntTSL 28.27□□□□□ -1.093e-88■■■■■ 27.5
SMNDC1O75940 SNORD14A-201ENST00000606526 91 ntBASIC2.52□□□□□ -2.013e-88■■■■■ 27.5
SMNDC1O75940 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.231e-8■■■■■ 27.5
SMNDC1O75940 FLCN-201ENST00000285071 3638 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.31e-8■■■■■ 27.5
SMNDC1O75940 AP1G1-215ENST00000568327 1724 ntTSL 517.33■□□□□ 0.372e-70■■■■■ 27.5
SMNDC1O75940 AP1G1-208ENST00000565009 2494 ntTSL 513.76□□□□□ -0.212e-70■■■■■ 27.5
SMNDC1O75940 AP1G1-218ENST00000569748 4554 ntAPPRIS P3 TSL 2 BASIC12.54□□□□□ -0.42e-70■■■■■ 27.5
SMNDC1O75940 AP1G1-202ENST00000393512 3593 ntAPPRIS ALT1 TSL 5 BASIC9.6□□□□□ -0.872e-70■■■■■ 27.5
SMNDC1O75940 AP1G1-201ENST00000299980 6969 ntAPPRIS P3 TSL 1 (best) BASIC8.59□□□□□ -1.032e-70■■■■■ 27.5
SMNDC1O75940 AP1G1-211ENST00000565642 2794 ntTSL 56.82□□□□□ -1.322e-70■■■■■ 27.5
SMNDC1O75940 AP1G1-213ENST00000566179 562 ntTSL 55.04□□□□□ -1.62e-70■■■■■ 27.5
SMNDC1O75940 SNORD71-201ENST00000411292 86 ntBASIC0.91□□□□□ -2.262e-70■■■■■ 27.5
SMNDC1O75940 SAT2-214ENST00000576846 1563 nt21.69■■□□□ 1.066e-6■■■■■ 27.4
SMNDC1O75940 SAT2-210ENST00000575114 803 ntTSL 219.77■□□□□ 0.766e-6■■■■■ 27.4
SMNDC1O75940 SAT2-209ENST00000573930 711 ntTSL 319.01■□□□□ 0.636e-6■■■■■ 27.4
SMNDC1O75940 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.35■□□□□ 0.534e-10■■■■■ 27.4
SMNDC1O75940 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.524e-10■■■■■ 27.4
SMNDC1O75940 ATP7B-214ENST00000634810 5825 ntTSL 1 (best)13.91□□□□□ -0.186e-6■■■■■ 27.4
SMNDC1O75940 SEPT9-204ENST00000427180 3635 ntTSL 2 BASIC13.19□□□□□ -0.36e-6■■■■■ 27.4
SMNDC1O75940 ATP7B-202ENST00000344297 5861 ntTSL 5 BASIC12.76□□□□□ -0.376e-6■■■■■ 27.4
SMNDC1O75940 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC12.66□□□□□ -0.384e-10■■■■■ 27.4
SMNDC1O75940 SAT2-202ENST00000380466 974 ntTSL 1 (best)12.52□□□□□ -0.416e-6■■■■■ 27.4
SMNDC1O75940 SAT2-213ENST00000576686 582 ntTSL 212.43□□□□□ -0.426e-6■■■■■ 27.4
SMNDC1O75940 ATP7B-203ENST00000400366 6304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.456e-6■■■■■ 27.4
SMNDC1O75940 ATP7B-201ENST00000242839 6638 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.526e-6■■■■■ 27.4
SMNDC1O75940 ATP7B-212ENST00000634519 727 ntTSL 311.71□□□□□ -0.536e-6■■■■■ 27.4
SMNDC1O75940 SAT2-206ENST00000571195 814 ntTSL 211.38□□□□□ -0.596e-6■■■■■ 27.4
SMNDC1O75940 ATP7B-213ENST00000634620 5653 ntTSL 1 (best)11.16□□□□□ -0.626e-6■■■■■ 27.4
SMNDC1O75940 SAT2-205ENST00000571074 860 ntTSL 210.86□□□□□ -0.676e-6■■■■■ 27.4
SMNDC1O75940 SAT2-208ENST00000573566 640 ntTSL 2 BASIC10.18□□□□□ -0.786e-6■■■■■ 27.4
SMNDC1O75940 SAT2-207ENST00000572224 669 ntTSL 310.16□□□□□ -0.786e-6■■■■■ 27.4
SMNDC1O75940 SAT2-211ENST00000575826 838 ntTSL 39.79□□□□□ -0.846e-6■■■■■ 27.4
SMNDC1O75940 ATP7B-206ENST00000448424 6404 ntAPPRIS ALT2 TSL 1 (best) BASIC9.7□□□□□ -0.866e-6■■■■■ 27.4
SMNDC1O75940 SAT2-212ENST00000576579 535 ntTSL 39.55□□□□□ -0.886e-6■■■■■ 27.4
SMNDC1O75940 SAT2-201ENST00000269298 946 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.956e-6■■■■■ 27.4
SMNDC1O75940 USP34-204ENST00000453133 1409 ntTSL 58.98□□□□□ -0.976e-6■■■■■ 27.4
SMNDC1O75940 SAT2-203ENST00000570850 685 ntTSL 38.05□□□□□ -1.126e-6■■■■■ 27.4
SMNDC1O75940 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.669e-8■■■■■ 27.4
SMNDC1O75940 PNPLA2-205ENST00000531923 637 ntTSL 220.47■□□□□ 0.878e-8■■■■■ 27.3
SMNDC1O75940 PNPLA2-202ENST00000525250 2726 ntTSL 219.88■□□□□ 0.778e-8■■■■■ 27.3
SMNDC1O75940 PABPC1-218ENST00000521865 628 ntTSL 218.89■□□□□ 0.618e-8■■■■■ 27.3
Retrieved 100 of 11,362 protein–RNA pairs in 176.7 ms