RNA–Protein interactions for RNA: ENST00000427497.3

AC055811.2-201, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene AC055811.2, Length 1,693 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC055811.2-201ENST00000427497 NISCHQ9Y2I1 1504 aa41.25■■■■■ 4.19
AC055811.2-201ENST00000427497 CCDC180Q9P1Z9 1646 aa36.9■■■■□ 3.5
AC055811.2-201ENST00000427497 ABCC9O60706 1549 aa36.54■■■■□ 3.44
AC055811.2-201ENST00000427497 RB1CC1Q8TDY2 1594 aa34.96■■■■□ 3.19
AC055811.2-201ENST00000427497 NACADO15069 1562 aa34.79■■■■□ 3.16
AC055811.2-201ENST00000427497 DCAF8L2P0C7V8 631 aa34.63■■■■□ 3.13
AC055811.2-201ENST00000427497 MYO15BQ96JP2 1530 aa34.42■■■■□ 3.1
AC055811.2-201ENST00000427497 ZCCHC6Q5VYS8 1495 aaKnown RBP34.31■■■■□ 3.08
AC055811.2-201ENST00000427497 UNC13AQ9UPW8 1703 aa34.21■■■■□ 3.07
AC055811.2-201ENST00000427497 DCAF1Q9Y4B6 1507 aa34.11■■■■□ 3.05
AC055811.2-201ENST00000427497 PABPN1Q86U42 306 aaKnown RBP eCLIP34.06■■■■□ 3.04
AC055811.2-201ENST00000427497 DNAJC5BQ9UF47 199 aa33.99■■■■□ 3.03
AC055811.2-201ENST00000427497 BICRAQ9NZM4 1560 aa33.93■■■■□ 3.02
AC055811.2-201ENST00000427497 SCRIBQ14160 1630 aa33.62■■■□□ 2.97
AC055811.2-201ENST00000427497 SHROOM4Q9ULL8 1493 aa33.5■■■□□ 2.95
AC055811.2-201ENST00000427497 EIF4G1Q04637 1599 aaKnown RBP33.07■■■□□ 2.88
AC055811.2-201ENST00000427497 CC2D2AQ9P2K1 1620 aa33.06■■■□□ 2.88
AC055811.2-201ENST00000427497 CECR2Q9BXF3 1484 aa32.89■■■□□ 2.86
AC055811.2-201ENST00000427497 SMARCA4P51532 1647 aa32.12■■■□□ 2.73
AC055811.2-201ENST00000427497 NCAPD3P42695 1498 aa32.1■■■□□ 2.73
AC055811.2-201ENST00000427497 ATAD2BQ9ULI0 1458 aa32.05■■■□□ 2.72
AC055811.2-201ENST00000427497 BAZ1AQ9NRL2 1556 aaPredicted RBP32.01■■■□□ 2.71
AC055811.2-201ENST00000427497 SMARCA2P51531 1590 aa31.99■■■□□ 2.71
AC055811.2-201ENST00000427497 HMGXB3Q12766 1538 aa31.91■■■□□ 2.7
AC055811.2-201ENST00000427497 SUPT5HO00267 1087 aaKnown RBP31.89■■■□□ 2.7
AC055811.2-201ENST00000427497 PEG3Q9GZU2 1588 aa31.81■■■□□ 2.68
AC055811.2-201ENST00000427497 MROH2BQ7Z745 1585 aa31.78■■■□□ 2.68
AC055811.2-201ENST00000427497 BAZ1BQ9UIG0 1483 aaKnown RBP31.75■■■□□ 2.67
AC055811.2-201ENST00000427497 RSF1Q96T23 1441 aaPredicted RBP31.66■■■□□ 2.66
AC055811.2-201ENST00000427497 ERCC6Q03468 1493 aa31.53■■■□□ 2.64
AC055811.2-201ENST00000427497 NESP48681 1621 aa31.5■■■□□ 2.63
AC055811.2-201ENST00000427497 WIZO95785 1651 aa31.43■■■□□ 2.62
AC055811.2-201ENST00000427497 CUX2O14529 1486 aa31.38■■■□□ 2.61
AC055811.2-201ENST00000427497 LAMC3Q9Y6N6 1575 aa31.35■■■□□ 2.61
AC055811.2-201ENST00000427497 KIF21AQ7Z4S6 1674 aa31.14■■■□□ 2.58
AC055811.2-201ENST00000427497 THOC2Q8NI27 1593 aaKnown RBP31.14■■■□□ 2.58
AC055811.2-201ENST00000427497 CADPSQ9ULU8 1353 aa31.13■■■□□ 2.57
AC055811.2-201ENST00000427497 PDS5BQ9NTI5 1447 aa31.13■■■□□ 2.57
AC055811.2-201ENST00000427497 TOP2AP11388 1531 aaKnown RBP31.05■■■□□ 2.56
AC055811.2-201ENST00000427497 DNAJC5Q9H3Z4 198 aa30.98■■■□□ 2.55
AC055811.2-201ENST00000427497 CFTRP13569 1480 aa30.87■■■□□ 2.53
AC055811.2-201ENST00000427497 MRC2Q9UBG0 1479 aa30.85■■■□□ 2.53
AC055811.2-201ENST00000427497 CEP164Q9UPV0 1460 aa30.79■■■□□ 2.52
AC055811.2-201ENST00000427497 FANCD2Q9BXW9 1451 aa30.79■■■□□ 2.52
AC055811.2-201ENST00000427497 WDR62O43379 1518 aa30.78■■■□□ 2.52
AC055811.2-201ENST00000427497 CCDC88BA6NC98 1476 aa30.68■■■□□ 2.5
AC055811.2-201ENST00000427497 PRDM2Q13029 1718 aa30.63■■■□□ 2.49
AC055811.2-201ENST00000427497 CHIC1Q5VXU3 224 aa30.58■■■□□ 2.49
AC055811.2-201ENST00000427497 URB2Q14146 1524 aaKnown RBP30.52■■■□□ 2.48
AC055811.2-201ENST00000427497 TOPBP1Q92547 1522 aa30.24■■■□□ 2.43
AC055811.2-201ENST00000427497 ABCC8Q09428 1581 aa30.2■■■□□ 2.43
AC055811.2-201ENST00000427497 DNMBPQ6XZF7 1577 aa30.17■■■□□ 2.42
AC055811.2-201ENST00000427497 IFT140Q96RY7 1462 aa30.16■■■□□ 2.42
AC055811.2-201ENST00000427497 ZNF608Q9ULD9 1512 aaPredicted RBP30.08■■■□□ 2.41
AC055811.2-201ENST00000427497 TRIM41Q8WV44 630 aa30.01■■■□□ 2.39
AC055811.2-201ENST00000427497 OSCARQ8IYS5 282 aa29.98■■■□□ 2.39
AC055811.2-201ENST00000427497 TARBP1Q13395 1621 aaKnown RBP29.98■■■□□ 2.39
AC055811.2-201ENST00000427497 POLA1P09884 1462 aaPredicted RBP29.96■■■□□ 2.39
AC055811.2-201ENST00000427497 EIF4G3O43432 1585 aaKnown RBP29.95■■■□□ 2.39
AC055811.2-201ENST00000427497 CUX1P39880 1505 aa29.85■■■□□ 2.37
AC055811.2-201ENST00000427497 AQRO60306 1485 aaKnown RBP eCLIP29.85■■■□□ 2.371e-7■■■■■ 41
AC055811.2-201ENST00000427497 RAD54L2Q9Y4B4 1467 aa29.83■■■□□ 2.37
AC055811.2-201ENST00000427497 FGD5Q6ZNL6 1462 aa29.81■■■□□ 2.36
AC055811.2-201ENST00000427497 SOGA1O94964 1423 aa29.81■■■□□ 2.36
AC055811.2-201ENST00000427497 WRNQ14191 1432 aaPredicted RBP eCLIP29.78■■■□□ 2.369e-6■■■■■ 50.1
AC055811.2-201ENST00000427497 TDRD9Q8NDG6 1382 aaKnown RBP29.71■■■□□ 2.35
AC055811.2-201ENST00000427497 WDR97A6NE52 1622 aa29.7■■■□□ 2.34
AC055811.2-201ENST00000427497 CHD1O14646 1710 aa29.69■■■□□ 2.34
AC055811.2-201ENST00000427497 SYNJ1O43426 1573 aa29.68■■■□□ 2.34
AC055811.2-201ENST00000427497 RIMBP3CA6NJZ7 1639 aa29.59■■■□□ 2.33
AC055811.2-201ENST00000427497 RIMBP3BA6NNM3 1639 aa29.59■■■□□ 2.33
AC055811.2-201ENST00000427497 RIMBP3Q9UFD9 1639 aa29.59■■■□□ 2.33
AC055811.2-201ENST00000427497 TOP2BQ02880 1626 aa29.58■■■□□ 2.33
AC055811.2-201ENST00000427497 BIVM-ERCC5R4GMW8 1640 aa29.57■■■□□ 2.32
AC055811.2-201ENST00000427497 FBLN2P98095 1184 aa29.56■■■□□ 2.32
AC055811.2-201ENST00000427497 SNAPC4Q5SXM2 1469 aa29.56■■■□□ 2.32
AC055811.2-201ENST00000427497 GRIN2BQ13224 1484 aa29.53■■■□□ 2.32
AC055811.2-201ENST00000427497 ARHGEF11O15085 1522 aa29.52■■■□□ 2.32
AC055811.2-201ENST00000427497 MAGI1Q96QZ7 1491 aaPredicted RBP29.5■■■□□ 2.31
AC055811.2-201ENST00000427497 ABCA10Q8WWZ4 1543 aa29.5■■■□□ 2.31
AC055811.2-201ENST00000427497 PBRM1Q86U86 1689 aa29.47■■■□□ 2.31
AC055811.2-201ENST00000427497 GAPVD1Q14C86 1478 aa29.47■■■□□ 2.31
AC055811.2-201ENST00000427497 ABCA5Q8WWZ7 1642 aa29.44■■■□□ 2.3
AC055811.2-201ENST00000427497 FAM9AQ8IZU1 332 aaPredicted RBP29.41■■■□□ 2.3
AC055811.2-201ENST00000427497 CHMP7Q8WUX9 453 aaPredicted RBP29.41■■■□□ 2.3
AC055811.2-201ENST00000427497 SYNJ2O15056 1496 aa29.39■■■□□ 2.3
AC055811.2-201ENST00000427497 EEA1Q15075 1411 aa29.36■■■□□ 2.29
AC055811.2-201ENST00000427497 LOC105371045A0A1W2PR82 267 aa29.36■■■□□ 2.29
AC055811.2-201ENST00000427497 CLASP1Q7Z460 1538 aa29.34■■■□□ 2.29
AC055811.2-201ENST00000427497 RUSC2Q8N2Y8 1516 aa29.28■■■□□ 2.28
AC055811.2-201ENST00000427497 CYB5RLQ6IPT4 315 aa29.25■■■□□ 2.27
AC055811.2-201ENST00000427497 ARAP1Q96P48 1450 aa29.25■■■□□ 2.27
AC055811.2-201ENST00000427497 ADAMTS12P58397 1594 aa29.19■■■□□ 2.26
AC055811.2-201ENST00000427497 GRIN2AQ12879 1464 aa29.16■■■□□ 2.26
AC055811.2-201ENST00000427497 CSRNP3Q8WYN3 585 aa29.15■■■□□ 2.26
AC055811.2-201ENST00000427497 ERICH3Q5RHP9 1530 aa29.14■■■□□ 2.26
AC055811.2-201ENST00000427497 FHAD1B1AJZ9 1412 aa29.1■■■□□ 2.25
AC055811.2-201ENST00000427497 CEP170Q5SW79 1584 aa29.04■■■□□ 2.24
AC055811.2-201ENST00000427497 NUP160Q12769 1436 aa29.04■■■□□ 2.24
AC055811.2-201ENST00000427497 KIF27Q86VH2 1401 aa29.02■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms