RNA–Protein interactions for RNA: ENST00000478085.5

SGSM3-209, Transcript of small G protein signaling modulator 3, humanhuman

TSL 2

Gene SGSM3, Length 4,218 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGSM3-209ENST00000478085 NISCHQ9Y2I1 1504 aa22.55■■□□□ 1.2
SGSM3-209ENST00000478085 DCAF8L2P0C7V8 631 aa21.82■■□□□ 1.08
SGSM3-209ENST00000478085 SHROOM4Q9ULL8 1493 aa20.69■□□□□ 0.9
SGSM3-209ENST00000478085 SUPT5HO00267 1087 aaKnown RBP20.59■□□□□ 0.89
SGSM3-209ENST00000478085 EHMT2Q96KQ7 1210 aa19.59■□□□□ 0.73
SGSM3-209ENST00000478085 ABCC9O60706 1549 aa19.36■□□□□ 0.69
SGSM3-209ENST00000478085 FAM9AQ8IZU1 332 aaPredicted RBP19.3■□□□□ 0.68
SGSM3-209ENST00000478085 TRIM41Q8WV44 630 aa19.06■□□□□ 0.64
SGSM3-209ENST00000478085 PABPN1Q86U42 306 aaKnown RBP eCLIP19.01■□□□□ 0.63
SGSM3-209ENST00000478085 RANGAP1P46060 587 aaPredicted RBP18.83■□□□□ 0.61
SGSM3-209ENST00000478085 TTBK1Q5TCY1 1321 aaPredicted RBP18.78■□□□□ 0.6
SGSM3-209ENST00000478085 APLP2Q06481 763 aa18.7■□□□□ 0.58
SGSM3-209ENST00000478085 ZCCHC6Q5VYS8 1495 aaKnown RBP18.7■□□□□ 0.58
SGSM3-209ENST00000478085 CHIC1Q5VXU3 224 aa18.7■□□□□ 0.58
SGSM3-209ENST00000478085 CCDC180Q9P1Z9 1646 aa18.67■□□□□ 0.58
SGSM3-209ENST00000478085 UBTFP17480 764 aaKnown RBP18.65■□□□□ 0.58
SGSM3-209ENST00000478085 PCGF6Q9BYE7 350 aa18.63■□□□□ 0.57
SGSM3-209ENST00000478085 LOC105371045A0A1W2PR82 267 aa18.55■□□□□ 0.56
SGSM3-209ENST00000478085 ATP1B4Q9UN42 357 aaPredicted RBP18.45■□□□□ 0.54
SGSM3-209ENST00000478085 SCRIBQ14160 1630 aa18.45■□□□□ 0.54
SGSM3-209ENST00000478085 PPARGC1BQ86YN6 1023 aaKnown RBP18.43■□□□□ 0.54
SGSM3-209ENST00000478085 RB1CC1Q8TDY2 1594 aa18.1■□□□□ 0.49
SGSM3-209ENST00000478085 CCER1Q8TC90 406 aaPredicted RBP18.08■□□□□ 0.48
SGSM3-209ENST00000478085 NACADO15069 1562 aa18.04■□□□□ 0.48
SGSM3-209ENST00000478085 TRIM26Q12899 539 aaPredicted RBP17.99■□□□□ 0.47
SGSM3-209ENST00000478085 RSF1Q96T23 1441 aaPredicted RBP17.94■□□□□ 0.46
SGSM3-209ENST00000478085 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.93■□□□□ 0.46
SGSM3-209ENST00000478085 HNRNPUL2Q1KMD3 747 aaKnown RBP17.93■□□□□ 0.46
SGSM3-209ENST00000478085 DCAF1Q9Y4B6 1507 aa17.92■□□□□ 0.46
SGSM3-209ENST00000478085 ITGAEP38570 1179 aa17.92■□□□□ 0.46
SGSM3-209ENST00000478085 CSRNP3Q8WYN3 585 aa17.84■□□□□ 0.45
SGSM3-209ENST00000478085 CECR2Q9BXF3 1484 aa17.83■□□□□ 0.45
SGSM3-209ENST00000478085 ZEB1P37275 1124 aaPredicted RBP17.8■□□□□ 0.44
SGSM3-209ENST00000478085 HRCP23327 699 aa17.78■□□□□ 0.44
SGSM3-209ENST00000478085 FBLN2P98095 1184 aa17.77■□□□□ 0.43
SGSM3-209ENST00000478085 P3H3Q8IVL6 736 aa17.68■□□□□ 0.42
SGSM3-209ENST00000478085 BAZ1BQ9UIG0 1483 aaKnown RBP17.57■□□□□ 0.4
SGSM3-209ENST00000478085 BAZ1AQ9NRL2 1556 aaPredicted RBP17.56■□□□□ 0.4
SGSM3-209ENST00000478085 MYT1LQ9UL68 1186 aa17.56■□□□□ 0.4
SGSM3-209ENST00000478085 FAM50AQ14320 339 aaKnown RBP17.55■□□□□ 0.4
SGSM3-209ENST00000478085 MROH2BQ7Z745 1585 aa17.55■□□□□ 0.4
SGSM3-209ENST00000478085 ARID3CA6NKF2 412 aa17.54■□□□□ 0.4
SGSM3-209ENST00000478085 MYO15BQ96JP2 1530 aa17.5■□□□□ 0.39
SGSM3-209ENST00000478085 PELP1Q8IZL8 1130 aaKnown RBP17.45■□□□□ 0.38
SGSM3-209ENST00000478085 WRNQ14191 1432 aaPredicted RBP eCLIP17.39■□□□□ 0.37
SGSM3-209ENST00000478085 CCDC88BA6NC98 1476 aa17.31■□□□□ 0.36
SGSM3-209ENST00000478085 YTHDC1Q96MU7 727 aaKnown RBP17.29■□□□□ 0.36
SGSM3-209ENST00000478085 TRIM52Q96A61 297 aa17.28■□□□□ 0.36
SGSM3-209ENST00000478085 WIZO95785 1651 aa17.27■□□□□ 0.35
SGSM3-209ENST00000478085 NEUROD1Q13562 356 aa17.24■□□□□ 0.35
SGSM3-209ENST00000478085 POLR3GLQ9BT43 218 aa17.23■□□□□ 0.35
SGSM3-209ENST00000478085 CHMP7Q8WUX9 453 aaPredicted RBP17.23■□□□□ 0.35
SGSM3-209ENST00000478085 CENPBP07199 599 aaPredicted RBP17.2■□□□□ 0.34
SGSM3-209ENST00000478085 ZNF777Q9ULD5 760 aaPredicted RBP17.19■□□□□ 0.34
SGSM3-209ENST00000478085 SOGA1O94964 1423 aa17.18■□□□□ 0.34
SGSM3-209ENST00000478085 CLIP1P30622 1438 aa17.16■□□□□ 0.34
SGSM3-209ENST00000478085 CNGB1Q14028 1251 aaPredicted RBP17.16■□□□□ 0.34
SGSM3-209ENST00000478085 SMARCA2P51531 1590 aa17.15■□□□□ 0.34
SGSM3-209ENST00000478085 ATAD2BQ9ULI0 1458 aa17.15■□□□□ 0.34
SGSM3-209ENST00000478085 EEA1Q15075 1411 aa17.14■□□□□ 0.33
SGSM3-209ENST00000478085 ABCC8Q09428 1581 aa17.14■□□□□ 0.33
SGSM3-209ENST00000478085 KIF27Q86VH2 1401 aa17.13■□□□□ 0.33
SGSM3-209ENST00000478085 CDK11AQ9UQ88 783 aaPredicted RBP17.13■□□□□ 0.33
SGSM3-209ENST00000478085 CEP162Q5TB80 1403 aa17.1■□□□□ 0.33
SGSM3-209ENST00000478085 GOLGA3Q08378 1498 aa17.08■□□□□ 0.32
SGSM3-209ENST00000478085 SMARCA4P51532 1647 aa17.07■□□□□ 0.32
SGSM3-209ENST00000478085 TOP2AP11388 1531 aaKnown RBP17.07■□□□□ 0.32
SGSM3-209ENST00000478085 ERCC6Q03468 1493 aa17.05■□□□□ 0.32
SGSM3-209ENST00000478085 TNIKQ9UKE5 1360 aa17.02■□□□□ 0.32
SGSM3-209ENST00000478085 DIEXFQ68CQ4 756 aaKnown RBP17.01■□□□□ 0.31
SGSM3-209ENST00000478085 CUX2O14529 1486 aa17.01■□□□□ 0.31
SGSM3-209ENST00000478085 ZNF326Q5BKZ1 582 aaKnown RBP17.01■□□□□ 0.31
SGSM3-209ENST00000478085 CHIC2Q9UKJ5 165 aa17.01■□□□□ 0.31
SGSM3-209ENST00000478085 CADPSQ9ULU8 1353 aa17■□□□□ 0.31
SGSM3-209ENST00000478085 CEP164Q9UPV0 1460 aa16.99■□□□□ 0.31
SGSM3-209ENST00000478085 MTUS2Q5JR59 1369 aa16.97■□□□□ 0.31
SGSM3-209ENST00000478085 CARMIL1Q5VZK9 1371 aa16.96■□□□□ 0.31
SGSM3-209ENST00000478085 TDRD9Q8NDG6 1382 aaKnown RBP16.96■□□□□ 0.31
SGSM3-209ENST00000478085 MYT1Q01538 1121 aa16.94■□□□□ 0.3
SGSM3-209ENST00000478085 NPM1P06748 294 aaKnown RBP eCLIP16.93■□□□□ 0.3
SGSM3-209ENST00000478085 PDS5BQ9NTI5 1447 aa16.92■□□□□ 0.3
SGSM3-209ENST00000478085 KCNH8Q96L42 1107 aa16.88■□□□□ 0.29
SGSM3-209ENST00000478085 SLC4A1APQ9BWU0 796 aaKnown RBP16.84■□□□□ 0.29
SGSM3-209ENST00000478085 RUSC2Q8N2Y8 1516 aa16.82■□□□□ 0.28
SGSM3-209ENST00000478085 ZNF316A6NFI3 1004 aaPredicted RBP16.82■□□□□ 0.28
SGSM3-209ENST00000478085 PLEKHD1A6NEE1 506 aa16.81■□□□□ 0.28
SGSM3-209ENST00000478085 EIF4G1Q04637 1599 aaKnown RBP16.81■□□□□ 0.28
SGSM3-209ENST00000478085 NEFLP07196 543 aa16.8■□□□□ 0.28
SGSM3-209ENST00000478085 RRP7BPQ9NSQ0 103 aa16.8■□□□□ 0.28
SGSM3-209ENST00000478085 NCAPD3P42695 1498 aa16.79■□□□□ 0.28
SGSM3-209ENST00000478085 TSPY4P0CV99 314 aa16.79■□□□□ 0.28
SGSM3-209ENST00000478085 TSPY10P0CW01 314 aa16.79■□□□□ 0.28
SGSM3-209ENST00000478085 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.77■□□□□ 0.28
SGSM3-209ENST00000478085 FANCD2Q9BXW9 1451 aa16.74■□□□□ 0.27
SGSM3-209ENST00000478085 KANK4Q5T7N3 995 aaPredicted RBP16.72■□□□□ 0.27
SGSM3-209ENST00000478085 CFDP1Q9UEE9 299 aaPredicted RBP16.69■□□□□ 0.26
SGSM3-209ENST00000478085 DNAJC5BQ9UF47 199 aa16.69■□□□□ 0.26
SGSM3-209ENST00000478085 TONSLQ96HA7 1378 aa16.68■□□□□ 0.26
SGSM3-209ENST00000478085 RAPGEF2Q9Y4G8 1499 aa16.68■□□□□ 0.26
SGSM3-209ENST00000478085 BICRAQ9NZM4 1560 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms