Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC23.91■■□□□ 1.42
SNX3O60493 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SNX3O60493 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC23.9■■□□□ 1.42
SNX3O60493 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
SNX3O60493 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
SNX3O60493 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
SNX3O60493 SETD8P1-201ENST00000623146 1180 ntBASIC23.89■■□□□ 1.41
SNX3O60493 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC23.89■■□□□ 1.41
SNX3O60493 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
SNX3O60493 AC096887.2-201ENST00000623443 1957 ntBASIC23.88■■□□□ 1.41
SNX3O60493 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SNX3O60493 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.88■■□□□ 1.41
SNX3O60493 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.88■■□□□ 1.41
SNX3O60493 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SNX3O60493 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SNX3O60493 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SNX3O60493 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.87■■□□□ 1.41
SNX3O60493 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SNX3O60493 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
SNX3O60493 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
SNX3O60493 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC23.86■■□□□ 1.41
SNX3O60493 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC23.86■■□□□ 1.41
SNX3O60493 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
SNX3O60493 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC23.85■■□□□ 1.41
SNX3O60493 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC23.85■■□□□ 1.41
SNX3O60493 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
SNX3O60493 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC23.85■■□□□ 1.41
SNX3O60493 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
SNX3O60493 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SNX3O60493 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SNX3O60493 EI24-212ENST00000615917 1407 ntTSL 2 BASIC23.84■■□□□ 1.41
SNX3O60493 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.84■■□□□ 1.41
SNX3O60493 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SNX3O60493 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SNX3O60493 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
SNX3O60493 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
SNX3O60493 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SNX3O60493 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SNX3O60493 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SNX3O60493 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
SNX3O60493 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.81■■□□□ 1.4
SNX3O60493 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SNX3O60493 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SNX3O60493 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SNX3O60493 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SNX3O60493 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SNX3O60493 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC23.8■■□□□ 1.4
SNX3O60493 CAHM-201ENST00000604200 896 ntBASIC23.8■■□□□ 1.4
SNX3O60493 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
SNX3O60493 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SNX3O60493 AP003733.4-201ENST00000623785 1697 ntBASIC23.79■■□□□ 1.4
SNX3O60493 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC23.79■■□□□ 1.4
SNX3O60493 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC23.79■■□□□ 1.4
SNX3O60493 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SNX3O60493 RARRES2P7-201ENST00000567349 469 ntBASIC23.79■■□□□ 1.4
SNX3O60493 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.78■■□□□ 1.4
SNX3O60493 CLDN5-201ENST00000403084 2357 ntBASIC23.78■■□□□ 1.4
SNX3O60493 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SNX3O60493 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SNX3O60493 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC23.78■■□□□ 1.4
SNX3O60493 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SNX3O60493 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC23.78■■□□□ 1.4
SNX3O60493 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SNX3O60493 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SNX3O60493 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SNX3O60493 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
SNX3O60493 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SNX3O60493 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SNX3O60493 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SNX3O60493 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SNX3O60493 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SNX3O60493 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SNX3O60493 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.76■■□□□ 1.39
SNX3O60493 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SNX3O60493 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
SNX3O60493 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
SNX3O60493 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SNX3O60493 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SNX3O60493 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
SNX3O60493 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
SNX3O60493 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SNX3O60493 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SNX3O60493 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SNX3O60493 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SNX3O60493 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
SNX3O60493 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
SNX3O60493 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SNX3O60493 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SNX3O60493 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SNX3O60493 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.75■■□□□ 1.39
SNX3O60493 DUSP8P5-201ENST00000422884 1815 ntBASIC23.75■■□□□ 1.39
SNX3O60493 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC23.74■■□□□ 1.39
SNX3O60493 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.74■■□□□ 1.39
SNX3O60493 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
SNX3O60493 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC23.74■■□□□ 1.39
SNX3O60493 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SNX3O60493 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SNX3O60493 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SNX3O60493 RPS2-209ENST00000529806 993 ntTSL 3 BASIC23.73■■□□□ 1.39
SNX3O60493 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms