Protein–RNA interactions for Protein: A6NDI0

TRIM49B, Putative tripartite motif-containing protein 49B, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49BA6NDI0 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC26.73■■□□□ 1.87
TRIM49BA6NDI0 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
TRIM49BA6NDI0 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
TRIM49BA6NDI0 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
TRIM49BA6NDI0 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
TRIM49BA6NDI0 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
TRIM49BA6NDI0 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC26.71■■□□□ 1.87
TRIM49BA6NDI0 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
TRIM49BA6NDI0 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
TRIM49BA6NDI0 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
TRIM49BA6NDI0 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
TRIM49BA6NDI0 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC26.7■■□□□ 1.87
TRIM49BA6NDI0 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
TRIM49BA6NDI0 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
TRIM49BA6NDI0 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
TRIM49BA6NDI0 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC26.7■■□□□ 1.86
TRIM49BA6NDI0 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC26.7■■□□□ 1.86
TRIM49BA6NDI0 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
TRIM49BA6NDI0 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
TRIM49BA6NDI0 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
TRIM49BA6NDI0 AL157400.5-201ENST00000507624 621 ntBASIC26.69■■□□□ 1.86
TRIM49BA6NDI0 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
TRIM49BA6NDI0 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC26.69■■□□□ 1.86
TRIM49BA6NDI0 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
TRIM49BA6NDI0 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC26.68■■□□□ 1.86
TRIM49BA6NDI0 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
TRIM49BA6NDI0 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
TRIM49BA6NDI0 MIR639-201ENST00000384974 98 ntBASIC26.67■■□□□ 1.86
TRIM49BA6NDI0 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC26.66■■□□□ 1.86
TRIM49BA6NDI0 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
TRIM49BA6NDI0 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC26.66■■□□□ 1.86
TRIM49BA6NDI0 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
TRIM49BA6NDI0 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
TRIM49BA6NDI0 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
TRIM49BA6NDI0 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
TRIM49BA6NDI0 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
TRIM49BA6NDI0 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
TRIM49BA6NDI0 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
TRIM49BA6NDI0 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
TRIM49BA6NDI0 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
TRIM49BA6NDI0 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
TRIM49BA6NDI0 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC26.66■■□□□ 1.86
TRIM49BA6NDI0 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
TRIM49BA6NDI0 AC060814.1-201ENST00000554326 538 ntBASIC26.65■■□□□ 1.86
TRIM49BA6NDI0 MOB2-207ENST00000614710 705 ntTSL 5 BASIC26.65■■□□□ 1.86
TRIM49BA6NDI0 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
TRIM49BA6NDI0 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
TRIM49BA6NDI0 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC26.65■■□□□ 1.86
TRIM49BA6NDI0 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC26.65■■□□□ 1.86
TRIM49BA6NDI0 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
TRIM49BA6NDI0 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
TRIM49BA6NDI0 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.86
TRIM49BA6NDI0 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
TRIM49BA6NDI0 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC26.64■■□□□ 1.85
TRIM49BA6NDI0 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
TRIM49BA6NDI0 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
TRIM49BA6NDI0 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC26.63■■□□□ 1.85
TRIM49BA6NDI0 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
TRIM49BA6NDI0 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
TRIM49BA6NDI0 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
TRIM49BA6NDI0 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC26.62■■□□□ 1.85
TRIM49BA6NDI0 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
TRIM49BA6NDI0 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC26.62■■□□□ 1.85
TRIM49BA6NDI0 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
TRIM49BA6NDI0 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
TRIM49BA6NDI0 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
TRIM49BA6NDI0 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
TRIM49BA6NDI0 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
TRIM49BA6NDI0 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC26.61■■□□□ 1.85
TRIM49BA6NDI0 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
TRIM49BA6NDI0 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC26.6■■□□□ 1.85
TRIM49BA6NDI0 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC26.6■■□□□ 1.85
TRIM49BA6NDI0 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC26.6■■□□□ 1.85
TRIM49BA6NDI0 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
TRIM49BA6NDI0 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC26.59■■□□□ 1.85
TRIM49BA6NDI0 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
TRIM49BA6NDI0 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC26.59■■□□□ 1.85
TRIM49BA6NDI0 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC26.59■■□□□ 1.85
TRIM49BA6NDI0 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC26.59■■□□□ 1.85
TRIM49BA6NDI0 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC26.59■■□□□ 1.85
TRIM49BA6NDI0 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC26.59■■□□□ 1.85
TRIM49BA6NDI0 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
TRIM49BA6NDI0 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC26.58■■□□□ 1.85
TRIM49BA6NDI0 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
TRIM49BA6NDI0 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC26.57■■□□□ 1.84
TRIM49BA6NDI0 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC26.57■■□□□ 1.84
TRIM49BA6NDI0 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
TRIM49BA6NDI0 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC26.57■■□□□ 1.84
TRIM49BA6NDI0 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
TRIM49BA6NDI0 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC26.57■■□□□ 1.84
TRIM49BA6NDI0 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
TRIM49BA6NDI0 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
TRIM49BA6NDI0 TPT1-202ENST00000379055 948 ntTSL 2 BASIC26.56■■□□□ 1.84
TRIM49BA6NDI0 AC025884.2-201ENST00000553429 711 ntBASIC26.56■■□□□ 1.84
TRIM49BA6NDI0 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC26.55■■□□□ 1.84
TRIM49BA6NDI0 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
TRIM49BA6NDI0 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC26.55■■□□□ 1.84
TRIM49BA6NDI0 SRP68-213ENST00000629930 165 ntTSL 5 BASIC26.55■■□□□ 1.84
TRIM49BA6NDI0 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
TRIM49BA6NDI0 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC26.55■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms