Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC24.33■■□□□ 1.49
VPS11Q9H270 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
VPS11Q9H270 AC010501.1-201ENST00000606270 1962 ntBASIC24.33■■□□□ 1.49
VPS11Q9H270 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
VPS11Q9H270 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC24.33■■□□□ 1.49
VPS11Q9H270 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC24.33■■□□□ 1.49
VPS11Q9H270 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
VPS11Q9H270 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
VPS11Q9H270 AC142381.3-201ENST00000568208 1670 ntBASIC24.32■■□□□ 1.48
VPS11Q9H270 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
VPS11Q9H270 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
VPS11Q9H270 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC24.32■■□□□ 1.48
VPS11Q9H270 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC24.32■■□□□ 1.48
VPS11Q9H270 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
VPS11Q9H270 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
VPS11Q9H270 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
VPS11Q9H270 THRA-202ENST00000394121 2260 ntTSL 2 BASIC24.31■■□□□ 1.48
VPS11Q9H270 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
VPS11Q9H270 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC24.31■■□□□ 1.48
VPS11Q9H270 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
VPS11Q9H270 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC24.31■■□□□ 1.48
VPS11Q9H270 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
VPS11Q9H270 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
VPS11Q9H270 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC24.3■■□□□ 1.48
VPS11Q9H270 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC24.3■■□□□ 1.48
VPS11Q9H270 LINC01971-201ENST00000617888 1048 ntBASIC24.3■■□□□ 1.48
VPS11Q9H270 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
VPS11Q9H270 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC24.29■■□□□ 1.48
VPS11Q9H270 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC24.29■■□□□ 1.48
VPS11Q9H270 RPS2P35-201ENST00000443417 897 ntBASIC24.29■■□□□ 1.48
VPS11Q9H270 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC24.29■■□□□ 1.48
VPS11Q9H270 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
VPS11Q9H270 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
VPS11Q9H270 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC24.29■■□□□ 1.48
VPS11Q9H270 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
VPS11Q9H270 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS11Q9H270 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS11Q9H270 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS11Q9H270 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS11Q9H270 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
VPS11Q9H270 CHST11-202ENST00000546689 756 ntTSL 2 BASIC24.28■■□□□ 1.48
VPS11Q9H270 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS11Q9H270 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
VPS11Q9H270 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
VPS11Q9H270 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
VPS11Q9H270 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
VPS11Q9H270 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
VPS11Q9H270 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
VPS11Q9H270 MED17-227ENST00000640521 2047 ntTSL 5 BASIC24.26■■□□□ 1.47
VPS11Q9H270 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
VPS11Q9H270 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
VPS11Q9H270 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
VPS11Q9H270 LTK-203ENST00000453182 2412 ntTSL 2 BASIC24.25■■□□□ 1.47
VPS11Q9H270 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC24.25■■□□□ 1.47
VPS11Q9H270 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
VPS11Q9H270 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC24.25■■□□□ 1.47
VPS11Q9H270 DUX4L13-201ENST00000554103 1267 ntBASIC24.25■■□□□ 1.47
VPS11Q9H270 DUX4L15-201ENST00000611059 1267 ntBASIC24.25■■□□□ 1.47
VPS11Q9H270 DUX4L23-201ENST00000615195 1269 ntBASIC24.25■■□□□ 1.47
VPS11Q9H270 DUX4L24-201ENST00000617576 1269 ntBASIC24.25■■□□□ 1.47
VPS11Q9H270 DUX4L22-201ENST00000618238 1269 ntBASIC24.25■■□□□ 1.47
VPS11Q9H270 DUX4L20-201ENST00000619712 1269 ntBASIC24.25■■□□□ 1.47
VPS11Q9H270 DUX4L21-201ENST00000622058 1269 ntBASIC24.25■■□□□ 1.47
VPS11Q9H270 DUX4L10-201ENST00000622460 1267 ntBASIC24.25■■□□□ 1.47
VPS11Q9H270 DUX4L25-201ENST00000624915 1269 ntBASIC24.25■■□□□ 1.47
VPS11Q9H270 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
VPS11Q9H270 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
VPS11Q9H270 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
VPS11Q9H270 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
VPS11Q9H270 RARA-203ENST00000394086 2008 ntTSL 2 BASIC24.24■■□□□ 1.47
VPS11Q9H270 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
VPS11Q9H270 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
VPS11Q9H270 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
VPS11Q9H270 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
VPS11Q9H270 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
VPS11Q9H270 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC24.24■■□□□ 1.47
VPS11Q9H270 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
VPS11Q9H270 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
VPS11Q9H270 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC24.23■■□□□ 1.47
VPS11Q9H270 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
VPS11Q9H270 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
VPS11Q9H270 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
VPS11Q9H270 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
VPS11Q9H270 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
VPS11Q9H270 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC24.22■■□□□ 1.47
VPS11Q9H270 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC24.22■■□□□ 1.47
VPS11Q9H270 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
VPS11Q9H270 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
VPS11Q9H270 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
VPS11Q9H270 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
VPS11Q9H270 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
VPS11Q9H270 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
VPS11Q9H270 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC24.21■■□□□ 1.47
VPS11Q9H270 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
VPS11Q9H270 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.47
VPS11Q9H270 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
VPS11Q9H270 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.2■■□□□ 1.46
VPS11Q9H270 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC24.2■■□□□ 1.46
VPS11Q9H270 MIR219A2-201ENST00000608502 1504 ntBASIC24.2■■□□□ 1.46
VPS11Q9H270 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms