Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
COL12A1Q99715 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.83■■□□□ 1.08
COL12A1Q99715 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
COL12A1Q99715 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
COL12A1Q99715 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.82■■□□□ 1.08
COL12A1Q99715 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.82■■□□□ 1.08
COL12A1Q99715 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL12A1Q99715 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL12A1Q99715 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL12A1Q99715 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL12A1Q99715 PFN2-211ENST00000489155 636 ntTSL 4 BASIC21.81■■□□□ 1.08
COL12A1Q99715 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL12A1Q99715 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL12A1Q99715 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL12A1Q99715 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.81■■□□□ 1.08
COL12A1Q99715 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
COL12A1Q99715 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL12A1Q99715 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL12A1Q99715 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL12A1Q99715 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL12A1Q99715 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
COL12A1Q99715 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL12A1Q99715 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL12A1Q99715 AC090192.1-201ENST00000517740 490 ntBASIC21.78■■□□□ 1.08
COL12A1Q99715 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
COL12A1Q99715 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL12A1Q99715 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
COL12A1Q99715 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC21.78■■□□□ 1.08
COL12A1Q99715 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
COL12A1Q99715 MIR3960-201ENST00000583311 91 ntBASIC21.78■■□□□ 1.08
COL12A1Q99715 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL12A1Q99715 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL12A1Q99715 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL12A1Q99715 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL12A1Q99715 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL12A1Q99715 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
COL12A1Q99715 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.76■■□□□ 1.07
COL12A1Q99715 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC21.75■■□□□ 1.07
COL12A1Q99715 BX664725.1-201ENST00000438252 379 ntBASIC21.75■■□□□ 1.07
COL12A1Q99715 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.75■■□□□ 1.07
COL12A1Q99715 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.75■■□□□ 1.07
COL12A1Q99715 SUDS3P1-201ENST00000505831 966 ntBASIC21.74■■□□□ 1.07
COL12A1Q99715 AC022616.5-201ENST00000518796 181 ntBASIC21.74■■□□□ 1.07
COL12A1Q99715 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
COL12A1Q99715 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL12A1Q99715 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.74■■□□□ 1.07
COL12A1Q99715 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.74■■□□□ 1.07
COL12A1Q99715 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
COL12A1Q99715 AL135925.1-201ENST00000605920 1701 ntBASIC21.73■■□□□ 1.07
COL12A1Q99715 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.73■■□□□ 1.07
COL12A1Q99715 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL12A1Q99715 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL12A1Q99715 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
COL12A1Q99715 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC21.72■■□□□ 1.07
COL12A1Q99715 AC087393.1-201ENST00000582896 145 ntBASIC21.72■■□□□ 1.07
COL12A1Q99715 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.71■■□□□ 1.07
COL12A1Q99715 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL12A1Q99715 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL12A1Q99715 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.71■■□□□ 1.07
COL12A1Q99715 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL12A1Q99715 TSPY9P-201ENST00000440215 945 ntBASIC21.71■■□□□ 1.07
COL12A1Q99715 TSPY11P-201ENST00000442607 1045 ntBASIC21.71■■□□□ 1.07
COL12A1Q99715 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
COL12A1Q99715 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.7■■□□□ 1.06
COL12A1Q99715 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL12A1Q99715 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.7■■□□□ 1.06
COL12A1Q99715 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL12A1Q99715 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL12A1Q99715 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.69■■□□□ 1.06
COL12A1Q99715 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL12A1Q99715 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.69■■□□□ 1.06
COL12A1Q99715 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.69■■□□□ 1.06
COL12A1Q99715 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL12A1Q99715 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL12A1Q99715 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL12A1Q99715 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.67■■□□□ 1.06
COL12A1Q99715 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL12A1Q99715 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.67■■□□□ 1.06
COL12A1Q99715 AC106739.1-201ENST00000617035 715 ntBASIC21.67■■□□□ 1.06
COL12A1Q99715 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL12A1Q99715 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.66■■□□□ 1.06
COL12A1Q99715 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL12A1Q99715 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL12A1Q99715 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL12A1Q99715 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL12A1Q99715 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL12A1Q99715 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL12A1Q99715 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.66■■□□□ 1.06
COL12A1Q99715 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL12A1Q99715 AL117332.1-201ENST00000622628 974 ntBASIC21.66■■□□□ 1.06
COL12A1Q99715 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL12A1Q99715 MIR3621-201ENST00000580529 85 ntBASIC21.65■■□□□ 1.06
COL12A1Q99715 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.65■■□□□ 1.06
COL12A1Q99715 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL12A1Q99715 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL12A1Q99715 AC087623.3-201ENST00000607047 1098 ntBASIC21.64■■□□□ 1.06
COL12A1Q99715 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
COL12A1Q99715 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.64■■□□□ 1.05
COL12A1Q99715 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.64■■□□□ 1.05
COL12A1Q99715 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms