Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
ALMS1Q8TCU4 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ALMS1Q8TCU4 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC16.85■□□□□ 0.29
ALMS1Q8TCU4 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
ALMS1Q8TCU4 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
ALMS1Q8TCU4 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ALMS1Q8TCU4 LONRF2P2-201ENST00000439212 571 ntBASIC16.84■□□□□ 0.29
ALMS1Q8TCU4 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ALMS1Q8TCU4 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ALMS1Q8TCU4 AC110285.6-201ENST00000617652 491 ntBASIC16.84■□□□□ 0.29
ALMS1Q8TCU4 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
ALMS1Q8TCU4 AL117332.1-201ENST00000622628 974 ntBASIC16.84■□□□□ 0.29
ALMS1Q8TCU4 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC16.84■□□□□ 0.29
ALMS1Q8TCU4 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ALMS1Q8TCU4 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
ALMS1Q8TCU4 AL136116.3-201ENST00000402907 1138 ntBASIC16.83■□□□□ 0.29
ALMS1Q8TCU4 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
ALMS1Q8TCU4 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ALMS1Q8TCU4 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ALMS1Q8TCU4 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
ALMS1Q8TCU4 AC022616.5-201ENST00000518796 181 ntBASIC16.83■□□□□ 0.28
ALMS1Q8TCU4 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC16.83■□□□□ 0.28
ALMS1Q8TCU4 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ALMS1Q8TCU4 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
ALMS1Q8TCU4 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
ALMS1Q8TCU4 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC16.83■□□□□ 0.28
ALMS1Q8TCU4 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
ALMS1Q8TCU4 RPS2P7-201ENST00000447334 885 ntBASIC16.82■□□□□ 0.28
ALMS1Q8TCU4 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC16.82■□□□□ 0.28
ALMS1Q8TCU4 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ALMS1Q8TCU4 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC16.81■□□□□ 0.28
ALMS1Q8TCU4 BX664725.1-201ENST00000438252 379 ntBASIC16.81■□□□□ 0.28
ALMS1Q8TCU4 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC16.81■□□□□ 0.28
ALMS1Q8TCU4 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ALMS1Q8TCU4 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
ALMS1Q8TCU4 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC16.81■□□□□ 0.28
ALMS1Q8TCU4 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ALMS1Q8TCU4 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ALMS1Q8TCU4 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ALMS1Q8TCU4 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
ALMS1Q8TCU4 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC16.8■□□□□ 0.28
ALMS1Q8TCU4 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ALMS1Q8TCU4 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC16.8■□□□□ 0.28
ALMS1Q8TCU4 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
ALMS1Q8TCU4 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC16.79■□□□□ 0.28
ALMS1Q8TCU4 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC16.79■□□□□ 0.28
ALMS1Q8TCU4 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ALMS1Q8TCU4 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
ALMS1Q8TCU4 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ALMS1Q8TCU4 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
ALMS1Q8TCU4 AC096631.2-201ENST00000436136 790 ntBASIC16.79■□□□□ 0.28
ALMS1Q8TCU4 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ALMS1Q8TCU4 AP004833.2-201ENST00000532228 1454 ntBASIC16.79■□□□□ 0.28
ALMS1Q8TCU4 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ALMS1Q8TCU4 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ALMS1Q8TCU4 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
ALMS1Q8TCU4 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ALMS1Q8TCU4 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC16.78■□□□□ 0.28
ALMS1Q8TCU4 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC16.78■□□□□ 0.28
ALMS1Q8TCU4 ZNRF2P3-201ENST00000424200 374 ntBASIC16.78■□□□□ 0.28
ALMS1Q8TCU4 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC16.77■□□□□ 0.28
ALMS1Q8TCU4 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC16.77■□□□□ 0.28
ALMS1Q8TCU4 AC005837.3-201ENST00000612163 286 ntBASIC16.77■□□□□ 0.28
ALMS1Q8TCU4 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC16.77■□□□□ 0.27
ALMS1Q8TCU4 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
ALMS1Q8TCU4 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC16.77■□□□□ 0.27
ALMS1Q8TCU4 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
ALMS1Q8TCU4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC16.77■□□□□ 0.27
ALMS1Q8TCU4 GUK1-205ENST00000366722 850 ntTSL 3 BASIC16.76■□□□□ 0.27
ALMS1Q8TCU4 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC16.76■□□□□ 0.27
ALMS1Q8TCU4 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ALMS1Q8TCU4 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ALMS1Q8TCU4 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ALMS1Q8TCU4 SRR-208ENST00000576848 588 ntTSL 4 BASIC16.76■□□□□ 0.27
ALMS1Q8TCU4 AL359504.2-201ENST00000605506 1601 ntBASIC16.76■□□□□ 0.27
ALMS1Q8TCU4 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ALMS1Q8TCU4 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ALMS1Q8TCU4 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC16.76■□□□□ 0.27
ALMS1Q8TCU4 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC16.75■□□□□ 0.27
ALMS1Q8TCU4 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
ALMS1Q8TCU4 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
ALMS1Q8TCU4 AL512631.2-201ENST00000604634 923 ntBASIC16.75■□□□□ 0.27
ALMS1Q8TCU4 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC16.75■□□□□ 0.27
ALMS1Q8TCU4 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
ALMS1Q8TCU4 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ALMS1Q8TCU4 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ALMS1Q8TCU4 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC16.74■□□□□ 0.27
ALMS1Q8TCU4 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC16.74■□□□□ 0.27
ALMS1Q8TCU4 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ALMS1Q8TCU4 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
ALMS1Q8TCU4 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ALMS1Q8TCU4 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC16.74■□□□□ 0.27
ALMS1Q8TCU4 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ALMS1Q8TCU4 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ALMS1Q8TCU4 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC16.74■□□□□ 0.27
ALMS1Q8TCU4 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC16.73■□□□□ 0.27
ALMS1Q8TCU4 RPP21-222ENST00000433076 577 ntTSL 2 BASIC16.73■□□□□ 0.27
ALMS1Q8TCU4 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
ALMS1Q8TCU4 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
ALMS1Q8TCU4 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms