Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
VPS13DQ5THJ4 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC16.75■□□□□ 0.27
VPS13DQ5THJ4 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS13DQ5THJ4 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
VPS13DQ5THJ4 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS13DQ5THJ4 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS13DQ5THJ4 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS13DQ5THJ4 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
VPS13DQ5THJ4 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC16.74■□□□□ 0.27
VPS13DQ5THJ4 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC16.74■□□□□ 0.27
VPS13DQ5THJ4 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VPS13DQ5THJ4 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC16.74■□□□□ 0.27
VPS13DQ5THJ4 HYI-210ENST00000486909 905 ntTSL 5 BASIC16.74■□□□□ 0.27
VPS13DQ5THJ4 WHAMMP3-201ENST00000611636 1609 ntBASIC16.74■□□□□ 0.27
VPS13DQ5THJ4 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS13DQ5THJ4 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS13DQ5THJ4 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS13DQ5THJ4 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
VPS13DQ5THJ4 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC16.73■□□□□ 0.27
VPS13DQ5THJ4 YBX1P4-201ENST00000392794 808 ntBASIC16.73■□□□□ 0.27
VPS13DQ5THJ4 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS13DQ5THJ4 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13DQ5THJ4 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC16.72■□□□□ 0.27
VPS13DQ5THJ4 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS13DQ5THJ4 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13DQ5THJ4 CREM-229ENST00000474362 1030 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS13DQ5THJ4 RNF146-205ENST00000477776 762 ntTSL 3 BASIC16.72■□□□□ 0.27
VPS13DQ5THJ4 AC019171.1-201ENST00000601251 1056 ntBASIC16.72■□□□□ 0.27
VPS13DQ5THJ4 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
VPS13DQ5THJ4 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
VPS13DQ5THJ4 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13DQ5THJ4 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13DQ5THJ4 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13DQ5THJ4 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13DQ5THJ4 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC16.71■□□□□ 0.27
VPS13DQ5THJ4 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC16.71■□□□□ 0.27
VPS13DQ5THJ4 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13DQ5THJ4 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS13DQ5THJ4 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
VPS13DQ5THJ4 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VPS13DQ5THJ4 MTX2-204ENST00000443241 799 ntTSL 3 BASIC16.7■□□□□ 0.26
VPS13DQ5THJ4 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13DQ5THJ4 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13DQ5THJ4 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13DQ5THJ4 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13DQ5THJ4 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS13DQ5THJ4 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS13DQ5THJ4 ABCB10P1-201ENST00000614297 2181 ntBASIC16.69■□□□□ 0.26
VPS13DQ5THJ4 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
VPS13DQ5THJ4 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS13DQ5THJ4 RPS2P7-201ENST00000447334 885 ntBASIC16.69■□□□□ 0.26
VPS13DQ5THJ4 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS13DQ5THJ4 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS13DQ5THJ4 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS13DQ5THJ4 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS13DQ5THJ4 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
VPS13DQ5THJ4 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS13DQ5THJ4 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS13DQ5THJ4 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS13DQ5THJ4 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
VPS13DQ5THJ4 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC16.67■□□□□ 0.26
VPS13DQ5THJ4 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS13DQ5THJ4 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC16.67■□□□□ 0.26
VPS13DQ5THJ4 AC022616.5-201ENST00000518796 181 ntBASIC16.67■□□□□ 0.26
VPS13DQ5THJ4 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS13DQ5THJ4 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS13DQ5THJ4 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC16.67■□□□□ 0.26
VPS13DQ5THJ4 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC16.67■□□□□ 0.26
VPS13DQ5THJ4 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS13DQ5THJ4 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS13DQ5THJ4 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS13DQ5THJ4 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS13DQ5THJ4 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS13DQ5THJ4 MIR4787-201ENST00000607364 84 ntBASIC16.65■□□□□ 0.26
VPS13DQ5THJ4 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
VPS13DQ5THJ4 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13DQ5THJ4 PEMT-206ENST00000435340 960 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS13DQ5THJ4 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS13DQ5THJ4 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS13DQ5THJ4 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13DQ5THJ4 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS13DQ5THJ4 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13DQ5THJ4 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VPS13DQ5THJ4 GRAMD4P7-201ENST00000578182 1232 ntBASIC16.64■□□□□ 0.25
VPS13DQ5THJ4 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS13DQ5THJ4 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13DQ5THJ4 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VPS13DQ5THJ4 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13DQ5THJ4 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS13DQ5THJ4 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13DQ5THJ4 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS13DQ5THJ4 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS13DQ5THJ4 LONRF2P2-201ENST00000439212 571 ntBASIC16.63■□□□□ 0.25
VPS13DQ5THJ4 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
VPS13DQ5THJ4 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS13DQ5THJ4 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13DQ5THJ4 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13DQ5THJ4 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS13DQ5THJ4 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13DQ5THJ4 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms