Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 MTX2-204ENST00000443241 799 ntTSL 3 BASIC28.56■■■□□ 2.16
HMGCS2P54868 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC28.55■■■□□ 2.16
HMGCS2P54868 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
HMGCS2P54868 OR2A1-AS1-204ENST00000470435 602 ntBASIC28.54■■■□□ 2.16
HMGCS2P54868 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC28.54■■■□□ 2.16
HMGCS2P54868 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
HMGCS2P54868 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
HMGCS2P54868 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
HMGCS2P54868 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
HMGCS2P54868 GUSBP5-201ENST00000418136 578 ntBASIC28.53■■■□□ 2.16
HMGCS2P54868 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC28.53■■■□□ 2.16
HMGCS2P54868 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
HMGCS2P54868 PRTG-204ENST00000561292 833 ntTSL 3 BASIC28.53■■■□□ 2.16
HMGCS2P54868 AL031848.2-201ENST00000607670 837 ntBASIC28.53■■■□□ 2.16
HMGCS2P54868 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
HMGCS2P54868 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC28.52■■■□□ 2.16
HMGCS2P54868 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC28.52■■■□□ 2.16
HMGCS2P54868 AL592295.1-201ENST00000400984 884 ntBASIC28.52■■■□□ 2.16
HMGCS2P54868 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC28.52■■■□□ 2.16
HMGCS2P54868 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
HMGCS2P54868 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC28.52■■■□□ 2.16
HMGCS2P54868 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC28.52■■■□□ 2.16
HMGCS2P54868 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
HMGCS2P54868 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC28.51■■■□□ 2.15
HMGCS2P54868 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC28.51■■■□□ 2.15
HMGCS2P54868 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC28.51■■■□□ 2.15
HMGCS2P54868 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC28.5■■■□□ 2.15
HMGCS2P54868 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
HMGCS2P54868 AC087393.1-201ENST00000582896 145 ntBASIC28.5■■■□□ 2.15
HMGCS2P54868 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC28.5■■■□□ 2.15
HMGCS2P54868 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
HMGCS2P54868 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC28.5■■■□□ 2.15
HMGCS2P54868 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
HMGCS2P54868 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC28.49■■■□□ 2.15
HMGCS2P54868 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
HMGCS2P54868 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC28.49■■■□□ 2.15
HMGCS2P54868 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC28.49■■■□□ 2.15
HMGCS2P54868 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC28.48■■■□□ 2.15
HMGCS2P54868 AC019171.1-201ENST00000601251 1056 ntBASIC28.48■■■□□ 2.15
HMGCS2P54868 AC131212.1-201ENST00000613771 668 ntBASIC28.48■■■□□ 2.15
HMGCS2P54868 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
HMGCS2P54868 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC28.48■■■□□ 2.15
HMGCS2P54868 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
HMGCS2P54868 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
HMGCS2P54868 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC28.47■■■□□ 2.15
HMGCS2P54868 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
HMGCS2P54868 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
HMGCS2P54868 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC28.47■■■□□ 2.15
HMGCS2P54868 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
HMGCS2P54868 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC28.46■■■□□ 2.15
HMGCS2P54868 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC28.46■■■□□ 2.15
HMGCS2P54868 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC28.46■■■□□ 2.15
HMGCS2P54868 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
HMGCS2P54868 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
HMGCS2P54868 THA1P-201ENST00000590384 1145 ntBASIC28.45■■■□□ 2.14
HMGCS2P54868 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC28.45■■■□□ 2.14
HMGCS2P54868 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
HMGCS2P54868 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC28.45■■■□□ 2.14
HMGCS2P54868 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC28.44■■■□□ 2.14
HMGCS2P54868 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
HMGCS2P54868 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC28.44■■■□□ 2.14
HMGCS2P54868 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC28.44■■■□□ 2.14
HMGCS2P54868 RPS2P7-201ENST00000447334 885 ntBASIC28.44■■■□□ 2.14
HMGCS2P54868 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
HMGCS2P54868 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC28.43■■■□□ 2.14
HMGCS2P54868 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
HMGCS2P54868 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC28.43■■■□□ 2.14
HMGCS2P54868 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC28.43■■■□□ 2.14
HMGCS2P54868 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC28.43■■■□□ 2.14
HMGCS2P54868 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
HMGCS2P54868 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC28.42■■■□□ 2.14
HMGCS2P54868 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC28.42■■■□□ 2.14
HMGCS2P54868 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC28.42■■■□□ 2.14
HMGCS2P54868 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
HMGCS2P54868 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC28.41■■■□□ 2.14
HMGCS2P54868 AL449106.1-201ENST00000608517 1980 ntBASIC28.41■■■□□ 2.14
HMGCS2P54868 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
HMGCS2P54868 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC28.41■■■□□ 2.14
HMGCS2P54868 DRD5P2-201ENST00000421395 2012 ntBASIC28.41■■■□□ 2.14
HMGCS2P54868 AC139426.1-201ENST00000568218 2529 ntBASIC28.41■■■□□ 2.14
HMGCS2P54868 LONRF2P2-201ENST00000439212 571 ntBASIC28.4■■■□□ 2.14
HMGCS2P54868 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC28.4■■■□□ 2.14
HMGCS2P54868 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
HMGCS2P54868 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
HMGCS2P54868 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
HMGCS2P54868 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC28.39■■■□□ 2.14
HMGCS2P54868 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC28.39■■■□□ 2.14
HMGCS2P54868 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
HMGCS2P54868 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
HMGCS2P54868 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC28.38■■■□□ 2.13
HMGCS2P54868 MTURN-203ENST00000409688 843 ntTSL 2 BASIC28.38■■■□□ 2.13
HMGCS2P54868 RNF146-205ENST00000477776 762 ntTSL 3 BASIC28.38■■■□□ 2.13
HMGCS2P54868 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
HMGCS2P54868 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC28.38■■■□□ 2.13
HMGCS2P54868 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
HMGCS2P54868 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
HMGCS2P54868 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
HMGCS2P54868 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
HMGCS2P54868 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
HMGCS2P54868 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC28.36■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms