Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTPN9P43378 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PTPN9P43378 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
PTPN9P43378 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
PTPN9P43378 AC091060.1-201ENST00000623524 1766 ntBASIC25.47■■□□□ 1.67
PTPN9P43378 ABHD17AP3-201ENST00000503096 1137 ntBASIC25.47■■□□□ 1.67
PTPN9P43378 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC25.47■■□□□ 1.67
PTPN9P43378 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
PTPN9P43378 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC25.46■■□□□ 1.67
PTPN9P43378 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
PTPN9P43378 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
PTPN9P43378 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC25.46■■□□□ 1.67
PTPN9P43378 SMPD5-203ENST00000639008 1464 ntBASIC25.46■■□□□ 1.67
PTPN9P43378 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
PTPN9P43378 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC25.45■■□□□ 1.66
PTPN9P43378 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.66
PTPN9P43378 AC092803.2-201ENST00000564287 1899 ntBASIC25.45■■□□□ 1.66
PTPN9P43378 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.66
PTPN9P43378 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC25.44■■□□□ 1.66
PTPN9P43378 REST-210ENST00000638187 1334 ntTSL 5 BASIC25.44■■□□□ 1.66
PTPN9P43378 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
PTPN9P43378 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC25.44■■□□□ 1.66
PTPN9P43378 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC25.44■■□□□ 1.66
PTPN9P43378 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC25.44■■□□□ 1.66
PTPN9P43378 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
PTPN9P43378 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC25.43■■□□□ 1.66
PTPN9P43378 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC25.42■■□□□ 1.66
PTPN9P43378 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
PTPN9P43378 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
PTPN9P43378 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC25.42■■□□□ 1.66
PTPN9P43378 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
PTPN9P43378 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC25.42■■□□□ 1.66
PTPN9P43378 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PTPN9P43378 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PTPN9P43378 MIR3960-201ENST00000583311 91 ntBASIC25.41■■□□□ 1.66
PTPN9P43378 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PTPN9P43378 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
PTPN9P43378 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC25.4■■□□□ 1.66
PTPN9P43378 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PTPN9P43378 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
PTPN9P43378 AC145676.1-201ENST00000514988 2004 ntBASIC25.39■■□□□ 1.66
PTPN9P43378 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC25.39■■□□□ 1.66
PTPN9P43378 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC25.39■■□□□ 1.66
PTPN9P43378 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC25.39■■□□□ 1.65
PTPN9P43378 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC25.39■■□□□ 1.65
PTPN9P43378 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
PTPN9P43378 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC25.38■■□□□ 1.65
PTPN9P43378 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PTPN9P43378 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PTPN9P43378 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PTPN9P43378 RNF126P1-201ENST00000567452 1320 ntBASIC25.37■■□□□ 1.65
PTPN9P43378 DUSP8P4-201ENST00000399538 1761 ntBASIC25.37■■□□□ 1.65
PTPN9P43378 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC25.37■■□□□ 1.65
PTPN9P43378 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC25.37■■□□□ 1.65
PTPN9P43378 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PTPN9P43378 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
PTPN9P43378 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25.36■■□□□ 1.65
PTPN9P43378 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
PTPN9P43378 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.36■■□□□ 1.65
PTPN9P43378 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PTPN9P43378 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
PTPN9P43378 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PTPN9P43378 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC25.35■■□□□ 1.65
PTPN9P43378 AC007029.1-201ENST00000604183 313 ntBASIC25.35■■□□□ 1.65
PTPN9P43378 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
PTPN9P43378 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
PTPN9P43378 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC25.34■■□□□ 1.65
PTPN9P43378 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC25.34■■□□□ 1.65
PTPN9P43378 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PTPN9P43378 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PTPN9P43378 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC25.34■■□□□ 1.65
PTPN9P43378 RP9P-202ENST00000450133 1212 ntBASIC25.33■■□□□ 1.65
PTPN9P43378 HSD17B1P1-201ENST00000590052 955 ntBASIC25.33■■□□□ 1.65
PTPN9P43378 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PTPN9P43378 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
PTPN9P43378 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PTPN9P43378 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PTPN9P43378 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
PTPN9P43378 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.32■■□□□ 1.64
PTPN9P43378 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PTPN9P43378 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PTPN9P43378 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PTPN9P43378 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
PTPN9P43378 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PTPN9P43378 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
PTPN9P43378 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC25.3■■□□□ 1.64
PTPN9P43378 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTPN9P43378 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTPN9P43378 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTPN9P43378 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
PTPN9P43378 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
PTPN9P43378 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTPN9P43378 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTPN9P43378 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
PTPN9P43378 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
PTPN9P43378 AC010501.1-201ENST00000606270 1962 ntBASIC25.29■■□□□ 1.64
PTPN9P43378 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
PTPN9P43378 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
PTPN9P43378 ERN1-208ENST00000606895 2068 ntBASIC25.29■■□□□ 1.64
PTPN9P43378 AC093536.1-201ENST00000569153 554 ntBASIC25.29■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms