Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.44■■□□□ 1.34
LSM1O15116 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
LSM1O15116 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
LSM1O15116 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.43■■□□□ 1.34
LSM1O15116 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LSM1O15116 HLA-V-202ENST00000446817 847 ntBASIC23.43■■□□□ 1.34
LSM1O15116 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC23.43■■□□□ 1.34
LSM1O15116 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC23.43■■□□□ 1.34
LSM1O15116 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.34
LSM1O15116 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC23.42■■□□□ 1.34
LSM1O15116 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
LSM1O15116 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.41■■□□□ 1.34
LSM1O15116 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
LSM1O15116 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LSM1O15116 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LSM1O15116 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
LSM1O15116 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC23.41■■□□□ 1.34
LSM1O15116 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LSM1O15116 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
LSM1O15116 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
LSM1O15116 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
LSM1O15116 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
LSM1O15116 PKM-204ENST00000449901 2526 ntTSL 2 BASIC23.4■■□□□ 1.34
LSM1O15116 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.4■■□□□ 1.34
LSM1O15116 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
LSM1O15116 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
LSM1O15116 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.4■■□□□ 1.34
LSM1O15116 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
LSM1O15116 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
LSM1O15116 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
LSM1O15116 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
LSM1O15116 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
LSM1O15116 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.39■■□□□ 1.33
LSM1O15116 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
LSM1O15116 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
LSM1O15116 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC23.38■■□□□ 1.33
LSM1O15116 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
LSM1O15116 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
LSM1O15116 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC23.38■■□□□ 1.33
LSM1O15116 AL359258.2-201ENST00000564063 1566 ntBASIC23.38■■□□□ 1.33
LSM1O15116 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
LSM1O15116 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.37■■□□□ 1.33
LSM1O15116 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
LSM1O15116 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC23.37■■□□□ 1.33
LSM1O15116 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LSM1O15116 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LSM1O15116 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
LSM1O15116 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.36■■□□□ 1.33
LSM1O15116 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
LSM1O15116 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LSM1O15116 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.35■■□□□ 1.33
LSM1O15116 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.35■■□□□ 1.33
LSM1O15116 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LSM1O15116 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LSM1O15116 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.35■■□□□ 1.33
LSM1O15116 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LSM1O15116 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
LSM1O15116 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
LSM1O15116 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LSM1O15116 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.34■■□□□ 1.33
LSM1O15116 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LSM1O15116 CR559946.2-201ENST00000623684 991 ntBASIC23.34■■□□□ 1.33
LSM1O15116 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
LSM1O15116 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC23.33■■□□□ 1.33
LSM1O15116 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
LSM1O15116 AL359504.2-201ENST00000605506 1601 ntBASIC23.33■■□□□ 1.33
LSM1O15116 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
LSM1O15116 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
LSM1O15116 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.32
LSM1O15116 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
LSM1O15116 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.32■■□□□ 1.32
LSM1O15116 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
LSM1O15116 MED25-210ENST00000612854 801 ntTSL 5 BASIC23.32■■□□□ 1.32
LSM1O15116 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
LSM1O15116 MED25-214ENST00000622402 642 ntTSL 5 BASIC23.32■■□□□ 1.32
LSM1O15116 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
LSM1O15116 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
LSM1O15116 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
LSM1O15116 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
LSM1O15116 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
LSM1O15116 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
LSM1O15116 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
LSM1O15116 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
LSM1O15116 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
LSM1O15116 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
LSM1O15116 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
LSM1O15116 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
LSM1O15116 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
LSM1O15116 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
LSM1O15116 AC096887.2-201ENST00000623443 1957 ntBASIC23.3■■□□□ 1.32
LSM1O15116 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.3■■□□□ 1.32
LSM1O15116 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
LSM1O15116 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
LSM1O15116 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
LSM1O15116 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
LSM1O15116 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
LSM1O15116 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
LSM1O15116 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC23.28■■□□□ 1.32
LSM1O15116 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
LSM1O15116 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms