Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
CCDC144BQ3MJ40 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC28.47■■■□□ 2.15
CCDC144BQ3MJ40 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC28.46■■■□□ 2.15
CCDC144BQ3MJ40 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
CCDC144BQ3MJ40 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
CCDC144BQ3MJ40 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.15
CCDC144BQ3MJ40 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC28.45■■■□□ 2.14
CCDC144BQ3MJ40 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC28.45■■■□□ 2.14
CCDC144BQ3MJ40 AC007029.1-201ENST00000604183 313 ntBASIC28.45■■■□□ 2.14
CCDC144BQ3MJ40 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC28.45■■■□□ 2.14
CCDC144BQ3MJ40 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC28.44■■■□□ 2.14
CCDC144BQ3MJ40 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC28.44■■■□□ 2.14
CCDC144BQ3MJ40 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC28.44■■■□□ 2.14
CCDC144BQ3MJ40 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC28.43■■■□□ 2.14
CCDC144BQ3MJ40 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC28.43■■■□□ 2.14
CCDC144BQ3MJ40 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC28.43■■■□□ 2.14
CCDC144BQ3MJ40 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC28.43■■■□□ 2.14
CCDC144BQ3MJ40 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
CCDC144BQ3MJ40 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC28.43■■■□□ 2.14
CCDC144BQ3MJ40 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
CCDC144BQ3MJ40 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
CCDC144BQ3MJ40 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC28.43■■■□□ 2.14
CCDC144BQ3MJ40 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC28.42■■■□□ 2.14
CCDC144BQ3MJ40 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC28.42■■■□□ 2.14
CCDC144BQ3MJ40 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
CCDC144BQ3MJ40 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
CCDC144BQ3MJ40 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
CCDC144BQ3MJ40 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC28.42■■■□□ 2.14
CCDC144BQ3MJ40 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
CCDC144BQ3MJ40 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
CCDC144BQ3MJ40 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
CCDC144BQ3MJ40 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC28.41■■■□□ 2.14
CCDC144BQ3MJ40 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC28.41■■■□□ 2.14
CCDC144BQ3MJ40 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC28.41■■■□□ 2.14
CCDC144BQ3MJ40 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC28.41■■■□□ 2.14
CCDC144BQ3MJ40 REST-210ENST00000638187 1334 ntTSL 5 BASIC28.41■■■□□ 2.14
CCDC144BQ3MJ40 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC28.4■■■□□ 2.14
CCDC144BQ3MJ40 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
CCDC144BQ3MJ40 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
CCDC144BQ3MJ40 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC28.4■■■□□ 2.14
CCDC144BQ3MJ40 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
CCDC144BQ3MJ40 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC28.4■■■□□ 2.14
CCDC144BQ3MJ40 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC28.39■■■□□ 2.14
CCDC144BQ3MJ40 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
CCDC144BQ3MJ40 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
CCDC144BQ3MJ40 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CCDC144BQ3MJ40 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CCDC144BQ3MJ40 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CCDC144BQ3MJ40 AL359258.2-201ENST00000564063 1566 ntBASIC28.38■■■□□ 2.13
CCDC144BQ3MJ40 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CCDC144BQ3MJ40 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC28.38■■■□□ 2.13
CCDC144BQ3MJ40 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC28.38■■■□□ 2.13
CCDC144BQ3MJ40 AC129492.7-201ENST00000622992 756 ntBASIC28.38■■■□□ 2.13
CCDC144BQ3MJ40 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC28.38■■■□□ 2.13
CCDC144BQ3MJ40 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC28.38■■■□□ 2.13
CCDC144BQ3MJ40 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
CCDC144BQ3MJ40 AC009831.1-201ENST00000580420 1582 ntBASIC28.37■■■□□ 2.13
CCDC144BQ3MJ40 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC28.37■■■□□ 2.13
CCDC144BQ3MJ40 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
CCDC144BQ3MJ40 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
CCDC144BQ3MJ40 AC133552.2-201ENST00000619106 1032 ntBASIC28.37■■■□□ 2.13
CCDC144BQ3MJ40 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC28.37■■■□□ 2.13
CCDC144BQ3MJ40 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC28.37■■■□□ 2.13
CCDC144BQ3MJ40 SMPD5-203ENST00000639008 1464 ntBASIC28.36■■■□□ 2.13
CCDC144BQ3MJ40 RARRES2P1-201ENST00000474487 481 ntBASIC28.36■■■□□ 2.13
CCDC144BQ3MJ40 AL592293.1-201ENST00000502889 1188 ntBASIC28.36■■■□□ 2.13
CCDC144BQ3MJ40 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC28.36■■■□□ 2.13
CCDC144BQ3MJ40 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
CCDC144BQ3MJ40 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CCDC144BQ3MJ40 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CCDC144BQ3MJ40 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CCDC144BQ3MJ40 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CCDC144BQ3MJ40 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
CCDC144BQ3MJ40 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CCDC144BQ3MJ40 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC28.34■■■□□ 2.13
CCDC144BQ3MJ40 SHF-208ENST00000560734 1731 ntTSL 3 BASIC28.33■■■□□ 2.13
CCDC144BQ3MJ40 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
CCDC144BQ3MJ40 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
CCDC144BQ3MJ40 PROC-203ENST00000409048 1586 ntTSL 5 BASIC28.33■■■□□ 2.12
CCDC144BQ3MJ40 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC28.32■■■□□ 2.12
CCDC144BQ3MJ40 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC28.32■■■□□ 2.12
CCDC144BQ3MJ40 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC28.32■■■□□ 2.12
CCDC144BQ3MJ40 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC28.32■■■□□ 2.12
CCDC144BQ3MJ40 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC28.32■■■□□ 2.12
CCDC144BQ3MJ40 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC28.32■■■□□ 2.12
CCDC144BQ3MJ40 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CCDC144BQ3MJ40 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC28.31■■■□□ 2.12
CCDC144BQ3MJ40 PKM-203ENST00000389093 2279 ntTSL 5 BASIC28.31■■■□□ 2.12
CCDC144BQ3MJ40 DUX4L18-201ENST00000553347 1267 ntBASIC28.31■■■□□ 2.12
CCDC144BQ3MJ40 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
CCDC144BQ3MJ40 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC28.31■■■□□ 2.12
CCDC144BQ3MJ40 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
CCDC144BQ3MJ40 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
CCDC144BQ3MJ40 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
CCDC144BQ3MJ40 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CCDC144BQ3MJ40 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
CCDC144BQ3MJ40 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
CCDC144BQ3MJ40 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CCDC144BQ3MJ40 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CCDC144BQ3MJ40 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC28.3■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms