Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CHD9Q3L8U1 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CHD9Q3L8U1 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
CHD9Q3L8U1 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
CHD9Q3L8U1 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
CHD9Q3L8U1 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
CHD9Q3L8U1 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC26.67■■□□□ 1.86
CHD9Q3L8U1 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC26.67■■□□□ 1.86
CHD9Q3L8U1 AC018755.3-202ENST00000596210 929 ntBASIC26.67■■□□□ 1.86
CHD9Q3L8U1 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
CHD9Q3L8U1 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CHD9Q3L8U1 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CHD9Q3L8U1 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
CHD9Q3L8U1 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
CHD9Q3L8U1 AC019171.1-201ENST00000601251 1056 ntBASIC26.65■■□□□ 1.86
CHD9Q3L8U1 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
CHD9Q3L8U1 CREM-229ENST00000474362 1030 ntTSL 2 BASIC26.65■■□□□ 1.86
CHD9Q3L8U1 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
CHD9Q3L8U1 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC26.64■■□□□ 1.86
CHD9Q3L8U1 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC26.64■■□□□ 1.86
CHD9Q3L8U1 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
CHD9Q3L8U1 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.64■■□□□ 1.85
CHD9Q3L8U1 TK2-216ENST00000564917 1156 ntTSL 3 BASIC26.64■■□□□ 1.85
CHD9Q3L8U1 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.85
CHD9Q3L8U1 GRAMD4P7-201ENST00000578182 1232 ntBASIC26.64■■□□□ 1.85
CHD9Q3L8U1 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC26.63■■□□□ 1.85
CHD9Q3L8U1 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC26.63■■□□□ 1.85
CHD9Q3L8U1 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
CHD9Q3L8U1 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CHD9Q3L8U1 MTX2-204ENST00000443241 799 ntTSL 3 BASIC26.62■■□□□ 1.85
CHD9Q3L8U1 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CHD9Q3L8U1 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
CHD9Q3L8U1 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CHD9Q3L8U1 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC26.61■■□□□ 1.85
CHD9Q3L8U1 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC26.61■■□□□ 1.85
CHD9Q3L8U1 RALB-208ENST00000631312 311 ntTSL 5 BASIC26.61■■□□□ 1.85
CHD9Q3L8U1 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CHD9Q3L8U1 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC26.6■■□□□ 1.85
CHD9Q3L8U1 ST7-AS1-201ENST00000456775 1889 ntBASIC26.6■■□□□ 1.85
CHD9Q3L8U1 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC26.6■■□□□ 1.85
CHD9Q3L8U1 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CHD9Q3L8U1 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC26.6■■□□□ 1.85
CHD9Q3L8U1 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
CHD9Q3L8U1 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC26.59■■□□□ 1.85
CHD9Q3L8U1 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
CHD9Q3L8U1 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
CHD9Q3L8U1 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC26.58■■□□□ 1.85
CHD9Q3L8U1 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
CHD9Q3L8U1 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CHD9Q3L8U1 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC26.57■■□□□ 1.84
CHD9Q3L8U1 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
CHD9Q3L8U1 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CHD9Q3L8U1 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
CHD9Q3L8U1 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC26.55■■□□□ 1.84
CHD9Q3L8U1 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
CHD9Q3L8U1 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC26.55■■□□□ 1.84
CHD9Q3L8U1 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
CHD9Q3L8U1 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CHD9Q3L8U1 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC26.53■■□□□ 1.84
CHD9Q3L8U1 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CHD9Q3L8U1 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CHD9Q3L8U1 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CHD9Q3L8U1 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC26.52■■□□□ 1.84
CHD9Q3L8U1 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC26.52■■□□□ 1.84
CHD9Q3L8U1 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
CHD9Q3L8U1 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CHD9Q3L8U1 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC26.52■■□□□ 1.84
CHD9Q3L8U1 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CHD9Q3L8U1 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC26.52■■□□□ 1.84
CHD9Q3L8U1 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CHD9Q3L8U1 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CHD9Q3L8U1 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC26.51■■□□□ 1.83
CHD9Q3L8U1 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC26.51■■□□□ 1.83
CHD9Q3L8U1 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CHD9Q3L8U1 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CHD9Q3L8U1 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CHD9Q3L8U1 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
CHD9Q3L8U1 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC26.5■■□□□ 1.83
CHD9Q3L8U1 UNC93B8-201ENST00000511903 705 ntBASIC26.5■■□□□ 1.83
CHD9Q3L8U1 AC131281.2-201ENST00000520478 145 ntBASIC26.5■■□□□ 1.83
CHD9Q3L8U1 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC26.5■■□□□ 1.83
CHD9Q3L8U1 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC26.5■■□□□ 1.83
CHD9Q3L8U1 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC26.5■■□□□ 1.83
CHD9Q3L8U1 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CHD9Q3L8U1 AP004833.2-201ENST00000532228 1454 ntBASIC26.5■■□□□ 1.83
CHD9Q3L8U1 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC26.49■■□□□ 1.83
CHD9Q3L8U1 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC26.49■■□□□ 1.83
CHD9Q3L8U1 MIR4787-201ENST00000607364 84 ntBASIC26.49■■□□□ 1.83
CHD9Q3L8U1 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC26.49■■□□□ 1.83
CHD9Q3L8U1 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
CHD9Q3L8U1 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC26.47■■□□□ 1.83
CHD9Q3L8U1 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CHD9Q3L8U1 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC26.47■■□□□ 1.83
CHD9Q3L8U1 AC087393.1-201ENST00000582896 145 ntBASIC26.47■■□□□ 1.83
CHD9Q3L8U1 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CHD9Q3L8U1 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC26.47■■□□□ 1.83
CHD9Q3L8U1 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CHD9Q3L8U1 AL359504.2-201ENST00000605506 1601 ntBASIC26.46■■□□□ 1.83
CHD9Q3L8U1 KRT125P-201ENST00000546827 989 ntBASIC26.46■■□□□ 1.83
CHD9Q3L8U1 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC26.45■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms