Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
MSH3P20585 CREM-210ENST00000374721 2020 ntTSL 5 BASIC24.41■■□□□ 1.5
MSH3P20585 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH3P20585 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH3P20585 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH3P20585 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH3P20585 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH3P20585 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
MSH3P20585 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC24.4■■□□□ 1.5
MSH3P20585 HSD17B1P1-201ENST00000590052 955 ntBASIC24.4■■□□□ 1.5
MSH3P20585 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
MSH3P20585 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC24.39■■□□□ 1.49
MSH3P20585 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH3P20585 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
MSH3P20585 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC24.38■■□□□ 1.49
MSH3P20585 AL157400.5-201ENST00000507624 621 ntBASIC24.38■■□□□ 1.49
MSH3P20585 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH3P20585 AC092296.2-201ENST00000589470 999 ntBASIC24.38■■□□□ 1.49
MSH3P20585 MOB2-207ENST00000614710 705 ntTSL 5 BASIC24.38■■□□□ 1.49
MSH3P20585 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
MSH3P20585 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH3P20585 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH3P20585 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
MSH3P20585 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
MSH3P20585 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
MSH3P20585 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC24.36■■□□□ 1.49
MSH3P20585 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
MSH3P20585 AP004609.3-201ENST00000610705 1884 ntBASIC24.36■■□□□ 1.49
MSH3P20585 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC24.35■■□□□ 1.49
MSH3P20585 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
MSH3P20585 ECEL1P2-201ENST00000461596 1295 ntBASIC24.35■■□□□ 1.49
MSH3P20585 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
MSH3P20585 AL359504.2-201ENST00000605506 1601 ntBASIC24.35■■□□□ 1.49
MSH3P20585 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
MSH3P20585 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC24.34■■□□□ 1.49
MSH3P20585 RNF126P1-201ENST00000567452 1320 ntBASIC24.34■■□□□ 1.49
MSH3P20585 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC24.33■■□□□ 1.49
MSH3P20585 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
MSH3P20585 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
MSH3P20585 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC24.33■■□□□ 1.48
MSH3P20585 AC142472.1-201ENST00000612013 1741 ntBASIC24.32■■□□□ 1.48
MSH3P20585 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC24.32■■□□□ 1.48
MSH3P20585 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC24.32■■□□□ 1.48
MSH3P20585 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC24.32■■□□□ 1.48
MSH3P20585 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH3P20585 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH3P20585 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC24.31■■□□□ 1.48
MSH3P20585 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH3P20585 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC24.31■■□□□ 1.48
MSH3P20585 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC24.31■■□□□ 1.48
MSH3P20585 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
MSH3P20585 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH3P20585 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH3P20585 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC24.3■■□□□ 1.48
MSH3P20585 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH3P20585 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
MSH3P20585 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
MSH3P20585 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
MSH3P20585 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC24.29■■□□□ 1.48
MSH3P20585 REST-210ENST00000638187 1334 ntTSL 5 BASIC24.29■■□□□ 1.48
MSH3P20585 SMPD5-203ENST00000639008 1464 ntBASIC24.28■■□□□ 1.48
MSH3P20585 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
MSH3P20585 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
MSH3P20585 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC24.27■■□□□ 1.48
MSH3P20585 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
MSH3P20585 BRD4-212ENST00000630599 726 ntTSL 2 BASIC24.27■■□□□ 1.48
MSH3P20585 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
MSH3P20585 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH3P20585 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC24.26■■□□□ 1.47
MSH3P20585 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC24.26■■□□□ 1.47
MSH3P20585 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH3P20585 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH3P20585 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
MSH3P20585 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
MSH3P20585 RARRES2P2-201ENST00000394842 485 ntBASIC24.25■■□□□ 1.47
MSH3P20585 AC025884.2-201ENST00000553429 711 ntBASIC24.25■■□□□ 1.47
MSH3P20585 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
MSH3P20585 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
MSH3P20585 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH3P20585 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC24.24■■□□□ 1.47
MSH3P20585 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC24.24■■□□□ 1.47
MSH3P20585 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
MSH3P20585 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC24.23■■□□□ 1.47
MSH3P20585 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.23■■□□□ 1.47
MSH3P20585 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
MSH3P20585 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC24.23■■□□□ 1.47
MSH3P20585 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
MSH3P20585 PKM-203ENST00000389093 2279 ntTSL 5 BASIC24.23■■□□□ 1.47
MSH3P20585 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC24.22■■□□□ 1.47
MSH3P20585 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC24.22■■□□□ 1.47
MSH3P20585 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
MSH3P20585 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH3P20585 PFN2-211ENST00000489155 636 ntTSL 4 BASIC24.21■■□□□ 1.47
MSH3P20585 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH3P20585 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC24.21■■□□□ 1.47
MSH3P20585 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC24.21■■□□□ 1.47
MSH3P20585 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.21■■□□□ 1.47
MSH3P20585 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
MSH3P20585 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.46
MSH3P20585 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms