Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 SMAD2-210ENST00000587421 575 ntTSL 412.77□□□□□ -0.375e-6■■■■□ 21.9
CDC40O60508 SMAD2-203ENST00000402690 12075 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.375e-6■■■■□ 21.9
CDC40O60508 USO1-201ENST00000264904 4135 ntTSL 2 BASIC12.65□□□□□ -0.385e-6■■■■□ 21.9
CDC40O60508 RBMS1-201ENST00000348849 4273 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.435e-6■■■■□ 21.9
CDC40O60508 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.455e-6■■■■□ 21.9
CDC40O60508 ATP11A-206ENST00000419631 2446 ntTSL 311.9□□□□□ -0.55e-6■■■■□ 21.9
CDC40O60508 KLC4-201ENST00000259708 2688 ntAPPRIS P4 TSL 2 BASIC11.5□□□□□ -0.575e-6■■■■□ 21.9
CDC40O60508 BRD4-210ENST00000601941 604 ntTSL 511.28□□□□□ -0.65e-6■■■■□ 21.9
CDC40O60508 ATP11A-210ENST00000471555 5786 ntTSL 1 (best)11.18□□□□□ -0.625e-6■■■■□ 21.9
CDC40O60508 KLC4-215ENST00000479388 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.715e-6■■■■□ 21.9
CDC40O60508 KLC4-213ENST00000472172 753 ntTSL 210.28□□□□□ -0.765e-6■■■■□ 21.9
CDC40O60508 KLC4-216ENST00000479632 528 ntTSL 410.28□□□□□ -0.765e-6■■■■□ 21.9
CDC40O60508 USO1-204ENST00000514213 4034 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.775e-6■■■■□ 21.9
CDC40O60508 ATP11A-214ENST00000493489 583 ntTSL 310.07□□□□□ -0.85e-6■■■■□ 21.9
CDC40O60508 UXS1-202ENST00000409032 1935 ntTSL 1 (best) BASIC9.36□□□□□ -0.915e-6■■■■□ 21.9
CDC40O60508 TRIO-214ENST00000509967 4949 ntTSL 2 BASIC8.85□□□□□ -0.995e-6■■■■□ 21.9
CDC40O60508 KLC4-209ENST00000467906 3604 ntTSL 28.83□□□□□ -15e-6■■■■□ 21.9
CDC40O60508 UXS1-215ENST00000497604 2907 ntTSL 26.39□□□□□ -1.395e-6■■■■□ 21.9
CDC40O60508 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.495e-6■■■■□ 21.9
CDC40O60508 RBMS1-209ENST00000474820 4016 ntTSL 1 (best)4.42□□□□□ -1.75e-6■■■■□ 21.9
CDC40O60508 UGDH-209ENST00000510881 549 ntTSL 34.27□□□□□ -1.735e-6■■■■□ 21.9
CDC40O60508 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.962e-6■■■■□ 21.8
CDC40O60508 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.842e-6■■■■□ 21.8
CDC40O60508 AKT1-215ENST00000555926 553 ntTSL 318.04■□□□□ 0.482e-6■■■■□ 21.8
CDC40O60508 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.412e-6■■■■□ 21.8
CDC40O60508 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.042e-6■■■■□ 21.8
CDC40O60508 AKT1-208ENST00000554581 3916 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.582e-6■■■■□ 21.8
CDC40O60508 AKT1-202ENST00000402615 3913 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.732e-6■■■■□ 21.8
CDC40O60508 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.29■□□□□ 0.362e-6■■■■□ 21.8
CDC40O60508 ANKMY1-222ENST00000484526 2969 ntTSL 215.15■□□□□ 0.022e-6■■■■□ 21.8
CDC40O60508 ANKMY1-224ENST00000496300 1569 ntTSL 513.42□□□□□ -0.262e-6■■■■□ 21.8
CDC40O60508 ANKMY1-218ENST00000462004 582 ntTSL 413.22□□□□□ -0.292e-6■■■■□ 21.8
CDC40O60508 ANKMY1-216ENST00000443318 565 ntTSL 313.08□□□□□ -0.322e-6■■■■□ 21.8
CDC40O60508 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC12.98□□□□□ -0.332e-6■■■■□ 21.8
CDC40O60508 ANKMY1-215ENST00000441168 555 ntTSL 411.24□□□□□ -0.612e-6■■■■□ 21.8
CDC40O60508 GNL3-210ENST00000492349 729 ntTSL 27.42□□□□□ -1.222e-6■■■■□ 21.8
CDC40O60508 ANKMY1-221ENST00000480230 4640 ntTSL 211.28□□□□□ -0.63e-6■■■■□ 21.8
CDC40O60508 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.245e-6■■■■□ 21.6
CDC40O60508 PSAT1-201ENST00000347159 1411 ntTSL 1 (best) BASIC11.77□□□□□ -0.538e-8■■■■□ 21.6
CDC40O60508 PSAT1-202ENST00000376588 2188 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.778e-8■■■■□ 21.6
CDC40O60508 PCF11-203ENST00000530304 2649 ntTSL 1 (best)17.56■□□□□ 0.42e-10■■■■□ 21.6
CDC40O60508 PCF11-206ENST00000533018 580 ntTSL 316.62■□□□□ 0.252e-10■■■■□ 21.6
CDC40O60508 PCF11-207ENST00000624931 1720 nt15.82■□□□□ 0.122e-10■■■■□ 21.6
CDC40O60508 PCF11-204ENST00000530660 3309 ntTSL 212.73□□□□□ -0.372e-10■■■■□ 21.6
CDC40O60508 PCF11-201ENST00000298281 7677 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.382e-10■■■■□ 21.6
CDC40O60508 AC008760.2-201ENST00000614781 1357 ntBASIC9.93□□□□□ -0.822e-9■■■■□ 21.5
CDC40O60508 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.213e-6■■■■□ 21.5
CDC40O60508 TRIM25-202ENST00000537230 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.553e-6■■■■□ 21.5
CDC40O60508 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.151e-9■■■■□ 21.4
CDC40O60508 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.33■□□□□ 0.368e-7■■■■□ 21.4
CDC40O60508 MLXIPL-210ENST00000476404 1921 ntTSL 214.7□□□□□ -0.065e-8■■■■□ 21.4
CDC40O60508 CTIF-206ENST00000588345 584 ntTSL 316.94■□□□□ 0.37e-11■■■■□ 21.4
CDC40O60508 CTIF-209ENST00000591387 859 ntTSL 216.65■□□□□ 0.267e-11■■■■□ 21.4
CDC40O60508 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.157e-11■■■■□ 21.4
CDC40O60508 CTIF-203ENST00000587752 683 ntTSL 513.95□□□□□ -0.187e-11■■■■□ 21.4
CDC40O60508 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC13.84□□□□□ -0.197e-11■■■■□ 21.4
CDC40O60508 CTIF-210ENST00000591412 491 ntTSL 312.3□□□□□ -0.447e-11■■■■□ 21.4
CDC40O60508 FOXRED1-203ENST00000525083 1228 ntTSL 216.07■□□□□ 0.161e-6■■■■□ 21.3
CDC40O60508 FOXRED1-207ENST00000527004 1760 ntTSL 514.47□□□□□ -0.091e-6■■■■□ 21.3
CDC40O60508 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.121e-6■■■■□ 21.3
CDC40O60508 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.161e-6■■■■□ 21.3
CDC40O60508 FOXRED1-204ENST00000525770 1427 ntTSL 213.46□□□□□ -0.261e-6■■■■□ 21.3
CDC40O60508 FOXRED1-217ENST00000534011 1955 ntTSL 212.61□□□□□ -0.391e-6■■■■□ 21.3
CDC40O60508 FOXRED1-218ENST00000534315 2210 ntTSL 1 (best)12.38□□□□□ -0.431e-6■■■■□ 21.3
CDC40O60508 FOXRED1-216ENST00000533839 559 ntTSL 48.91□□□□□ -0.981e-6■■■■□ 21.3
CDC40O60508 FOXRED1-210ENST00000530642 3045 ntTSL 27.57□□□□□ -1.21e-6■■■■□ 21.3
CDC40O60508 SEPT9-247ENST00000593189 817 ntTSL 510.49□□□□□ -0.736e-7■■■■□ 21.3
CDC40O60508 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.173e-8■■■■□ 21.3
CDC40O60508 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC22.93■■□□□ 1.263e-6■■■■□ 21.2
CDC40O60508 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC22.3■■□□□ 1.163e-6■■■■□ 21.2
CDC40O60508 TBX2-AS1-204ENST00000591313 640 ntTSL 217.26■□□□□ 0.353e-6■■■■□ 21.2
CDC40O60508 TBX2-AS1-205ENST00000592009 330 ntTSL 315.3■□□□□ 0.043e-6■■■■□ 21.2
CDC40O60508 AC005746.2-201ENST00000585765 470 ntTSL 5 BASIC9.97□□□□□ -0.813e-6■■■■□ 21.2
CDC40O60508 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.73■□□□□ 0.112e-7■■■■□ 21.2
CDC40O60508 RTEL1-TNFRSF6B-203ENST00000492259 4824 ntAPPRIS ALT2 TSL 515.51■□□□□ 0.072e-7■■■■□ 21.2
CDC40O60508 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.29□□□□□ -0.122e-7■■■■□ 21.2
CDC40O60508 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.23□□□□□ -0.132e-7■■■■□ 21.2
CDC40O60508 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.22e-7■■■■□ 21.2
CDC40O60508 RTEL1-211ENST00000508582 4273 ntTSL 2 BASIC12□□□□□ -0.492e-7■■■■□ 21.2
CDC40O60508 LAMA5-202ENST00000370677 1674 ntTSL 218.11■□□□□ 0.492e-6■■■■□ 21.2
CDC40O60508 DIAPH1-213ENST00000523100 1180 ntTSL 522■■□□□ 1.119e-8■■■■□ 21.1
CDC40O60508 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.749e-8■■■■□ 21.1
CDC40O60508 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.77■□□□□ 0.69e-8■■■■□ 21.1
CDC40O60508 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.52■□□□□ 0.569e-8■■■■□ 21.1
CDC40O60508 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.83■□□□□ 0.449e-8■■■■□ 21.1
CDC40O60508 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.429e-8■■■■□ 21.1
CDC40O60508 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.429e-8■■■■□ 21.1
CDC40O60508 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.67■□□□□ 0.429e-8■■■■□ 21.1
CDC40O60508 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.62■□□□□ 0.419e-8■■■■□ 21.1
CDC40O60508 EIF4G1-235ENST00000482303 493 ntTSL 213.02□□□□□ -0.339e-8■■■■□ 21.1
CDC40O60508 MAP4K4-208ENST00000418101 776 ntTSL 39.46□□□□□ -0.99e-8■■■■□ 21.1
CDC40O60508 DIAPH1-211ENST00000518047 4668 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.919e-8■■■■□ 21.1
CDC40O60508 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC9.07□□□□□ -0.969e-8■■■■□ 21.1
CDC40O60508 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC8.82□□□□□ -19e-8■■■■□ 21.1
CDC40O60508 MAP4K4-213ENST00000476609 3598 ntTSL 28.81□□□□□ -19e-8■■■■□ 21.1
CDC40O60508 MAP4K4-220ENST00000627726 3135 ntTSL 5 BASIC8.69□□□□□ -1.029e-8■■■■□ 21.1
CDC40O60508 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC8.03□□□□□ -1.129e-8■■■■□ 21.1
CDC40O60508 MAP4K4-209ENST00000421882 3416 ntTSL 57.93□□□□□ -1.149e-8■■■■□ 21.1
CDC40O60508 MAP4K4-212ENST00000456652 3855 ntTSL 5 BASIC7.68□□□□□ -1.189e-8■■■■□ 21.1
CDC40O60508 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC6.86□□□□□ -1.319e-8■■■■□ 21.1
Retrieved 100 of 5,364 protein–RNA pairs in 28 ms