RNA–Protein interactions for RNA: ENST00000263578.9

FOXRED1-201, Transcript of FAD dependent oxidoreductase domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene FOXRED1, Length 1,970 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXRED1-201ENST00000263578 NISCHQ9Y2I1 1504 aa35.23■■■■□ 3.23
FOXRED1-201ENST00000263578 CCDC180Q9P1Z9 1646 aa30.7■■■□□ 2.5
FOXRED1-201ENST00000263578 ZCCHC6Q5VYS8 1495 aaKnown RBP29.65■■■□□ 2.34
FOXRED1-201ENST00000263578 DCAF1Q9Y4B6 1507 aa29.14■■■□□ 2.26
FOXRED1-201ENST00000263578 DCAF8L2P0C7V8 631 aa28.98■■■□□ 2.23
FOXRED1-201ENST00000263578 SHROOM4Q9ULL8 1493 aa28.86■■■□□ 2.21
FOXRED1-201ENST00000263578 ABCC9O60706 1549 aa28.82■■■□□ 2.2
FOXRED1-201ENST00000263578 MYO15BQ96JP2 1530 aa28.72■■■□□ 2.19
FOXRED1-201ENST00000263578 NACADO15069 1562 aa28.51■■■□□ 2.15
FOXRED1-201ENST00000263578 SCRIBQ14160 1630 aa28.25■■■□□ 2.11
FOXRED1-201ENST00000263578 RB1CC1Q8TDY2 1594 aa28.23■■■□□ 2.11
FOXRED1-201ENST00000263578 SUPT5HO00267 1087 aaKnown RBP27.82■■■□□ 2.04
FOXRED1-201ENST00000263578 UNC13AQ9UPW8 1703 aa27.73■■■□□ 2.03
FOXRED1-201ENST00000263578 RSF1Q96T23 1441 aaPredicted RBP27.38■■□□□ 1.97
FOXRED1-201ENST00000263578 BICRAQ9NZM4 1560 aa27.37■■□□□ 1.97
FOXRED1-201ENST00000263578 CECR2Q9BXF3 1484 aa27.35■■□□□ 1.97
FOXRED1-201ENST00000263578 MROH2BQ7Z745 1585 aa27.23■■□□□ 1.95
FOXRED1-201ENST00000263578 BAZ1AQ9NRL2 1556 aaPredicted RBP27.21■■□□□ 1.95
FOXRED1-201ENST00000263578 PABPN1Q86U42 306 aaKnown RBP eCLIP27.17■■□□□ 1.94
FOXRED1-201ENST00000263578 SMARCA4P51532 1647 aa27.08■■□□□ 1.93
FOXRED1-201ENST00000263578 WIZO95785 1651 aa27.05■■□□□ 1.92
FOXRED1-201ENST00000263578 TOP2AP11388 1531 aaKnown RBP26.77■■□□□ 1.88
FOXRED1-201ENST00000263578 PEG3Q9GZU2 1588 aa26.73■■□□□ 1.87
FOXRED1-201ENST00000263578 CHIC1Q5VXU3 224 aa26.72■■□□□ 1.87
FOXRED1-201ENST00000263578 SMARCA2P51531 1590 aa26.56■■□□□ 1.84
FOXRED1-201ENST00000263578 ATAD2BQ9ULI0 1458 aa26.55■■□□□ 1.84
FOXRED1-201ENST00000263578 EIF4G1Q04637 1599 aaKnown RBP26.54■■□□□ 1.84
FOXRED1-201ENST00000263578 CCDC88BA6NC98 1476 aa26.46■■□□□ 1.83
FOXRED1-201ENST00000263578 BAZ1BQ9UIG0 1483 aaKnown RBP26.43■■□□□ 1.82
FOXRED1-201ENST00000263578 HMGXB3Q12766 1538 aa26.31■■□□□ 1.8
FOXRED1-201ENST00000263578 NCAPD3P42695 1498 aa26.28■■□□□ 1.8
FOXRED1-201ENST00000263578 TRIM41Q8WV44 630 aa26.14■■□□□ 1.77
FOXRED1-201ENST00000263578 CC2D2AQ9P2K1 1620 aa26.11■■□□□ 1.77
FOXRED1-201ENST00000263578 ABCC8Q09428 1581 aa25.99■■□□□ 1.75
FOXRED1-201ENST00000263578 WRNQ14191 1432 aaPredicted RBP eCLIP25.78■■□□□ 1.72
FOXRED1-201ENST00000263578 CFTRP13569 1480 aa25.76■■□□□ 1.71
FOXRED1-201ENST00000263578 PRDM2Q13029 1718 aa25.74■■□□□ 1.71
FOXRED1-201ENST00000263578 SYNJ1O43426 1573 aa25.71■■□□□ 1.71
FOXRED1-201ENST00000263578 LOC105371045A0A1W2PR82 267 aa25.69■■□□□ 1.7
FOXRED1-201ENST00000263578 FAM9AQ8IZU1 332 aaPredicted RBP25.67■■□□□ 1.7
FOXRED1-201ENST00000263578 CADPSQ9ULU8 1353 aa25.61■■□□□ 1.69
FOXRED1-201ENST00000263578 TOP2BQ02880 1626 aa25.58■■□□□ 1.69
FOXRED1-201ENST00000263578 BIVM-ERCC5R4GMW8 1640 aa25.57■■□□□ 1.68
FOXRED1-201ENST00000263578 EEA1Q15075 1411 aa25.51■■□□□ 1.67
FOXRED1-201ENST00000263578 SOGA1O94964 1423 aa25.51■■□□□ 1.67
FOXRED1-201ENST00000263578 CUX1P39880 1505 aa25.46■■□□□ 1.67
FOXRED1-201ENST00000263578 RUSC2Q8N2Y8 1516 aa25.4■■□□□ 1.66
FOXRED1-201ENST00000263578 LAMC3Q9Y6N6 1575 aa25.4■■□□□ 1.66
FOXRED1-201ENST00000263578 FANCD2Q9BXW9 1451 aa25.36■■□□□ 1.65
FOXRED1-201ENST00000263578 NESP48681 1621 aa25.36■■□□□ 1.65
FOXRED1-201ENST00000263578 EHMT2Q96KQ7 1210 aa25.31■■□□□ 1.64
FOXRED1-201ENST00000263578 DNAJC5BQ9UF47 199 aa25.31■■□□□ 1.64
FOXRED1-201ENST00000263578 CSRNP3Q8WYN3 585 aa25.31■■□□□ 1.64
FOXRED1-201ENST00000263578 KIF21BO75037 1637 aa25.21■■□□□ 1.63
FOXRED1-201ENST00000263578 CEP164Q9UPV0 1460 aa25.2■■□□□ 1.62
FOXRED1-201ENST00000263578 DNMBPQ6XZF7 1577 aa25.19■■□□□ 1.62
FOXRED1-201ENST00000263578 GOLGA3Q08378 1498 aa25.18■■□□□ 1.62
FOXRED1-201ENST00000263578 PDS5BQ9NTI5 1447 aa25.16■■□□□ 1.62
FOXRED1-201ENST00000263578 FGD5Q6ZNL6 1462 aa25.15■■□□□ 1.62
FOXRED1-201ENST00000263578 KIF27Q86VH2 1401 aa25.11■■□□□ 1.61
FOXRED1-201ENST00000263578 TOPBP1Q92547 1522 aa25.11■■□□□ 1.61
FOXRED1-201ENST00000263578 KIF21AQ7Z4S6 1674 aa25.11■■□□□ 1.61
FOXRED1-201ENST00000263578 TNIKQ9UKE5 1360 aa25.11■■□□□ 1.61
FOXRED1-201ENST00000263578 URB2Q14146 1524 aaKnown RBP25.04■■□□□ 1.6
FOXRED1-201ENST00000263578 CUX2O14529 1486 aa25.02■■□□□ 1.6
FOXRED1-201ENST00000263578 CEP162Q5TB80 1403 aa25.02■■□□□ 1.6
FOXRED1-201ENST00000263578 UBTFP17480 764 aaKnown RBP25.01■■□□□ 1.59
FOXRED1-201ENST00000263578 POLA1P09884 1462 aaPredicted RBP25.01■■□□□ 1.59
FOXRED1-201ENST00000263578 ERICH3Q5RHP9 1530 aa25■■□□□ 1.59
FOXRED1-201ENST00000263578 RAPGEF2Q9Y4G8 1499 aa25■■□□□ 1.59
FOXRED1-201ENST00000263578 PRXQ9BXM0 1461 aa24.99■■□□□ 1.59
FOXRED1-201ENST00000263578 ABCA10Q8WWZ4 1543 aa24.93■■□□□ 1.58
FOXRED1-201ENST00000263578 RAD54L2Q9Y4B4 1467 aa24.91■■□□□ 1.58
FOXRED1-201ENST00000263578 WDR97A6NE52 1622 aa24.89■■□□□ 1.58
FOXRED1-201ENST00000263578 MRC2Q9UBG0 1479 aa24.85■■□□□ 1.57
FOXRED1-201ENST00000263578 IGF1RP08069 1367 aa24.84■■□□□ 1.57
FOXRED1-201ENST00000263578 CLIP1P30622 1438 aa24.77■■□□□ 1.56
FOXRED1-201ENST00000263578 ABCA5Q8WWZ7 1642 aa24.75■■□□□ 1.55
FOXRED1-201ENST00000263578 TARBP1Q13395 1621 aaKnown RBP24.74■■□□□ 1.55
FOXRED1-201ENST00000263578 CARMIL1Q5VZK9 1371 aa24.73■■□□□ 1.55
FOXRED1-201ENST00000263578 WDR62O43379 1518 aa24.73■■□□□ 1.55
FOXRED1-201ENST00000263578 CUL7Q14999 1698 aa24.72■■□□□ 1.55
FOXRED1-201ENST00000263578 PCGF6Q9BYE7 350 aa24.72■■□□□ 1.55
FOXRED1-201ENST00000263578 ERCC6Q03468 1493 aa24.7■■□□□ 1.54
FOXRED1-201ENST00000263578 TRIM26Q12899 539 aaPredicted RBP24.67■■□□□ 1.54
FOXRED1-201ENST00000263578 GAPVD1Q14C86 1478 aa24.65■■□□□ 1.54
FOXRED1-201ENST00000263578 THOC2Q8NI27 1593 aaKnown RBP24.64■■□□□ 1.53
FOXRED1-201ENST00000263578 TDRD9Q8NDG6 1382 aaKnown RBP24.63■■□□□ 1.53
FOXRED1-201ENST00000263578 VPS8Q8N3P4 1428 aa24.59■■□□□ 1.53
FOXRED1-201ENST00000263578 IFT140Q96RY7 1462 aa24.57■■□□□ 1.52
FOXRED1-201ENST00000263578 PBRM1Q86U86 1689 aa24.57■■□□□ 1.52
FOXRED1-201ENST00000263578 RANGAP1P46060 587 aaPredicted RBP24.56■■□□□ 1.52
FOXRED1-201ENST00000263578 ARAP1Q96P48 1450 aa24.53■■□□□ 1.52
FOXRED1-201ENST00000263578 CTTNBP2Q8WZ74 1663 aa24.5■■□□□ 1.51
FOXRED1-201ENST00000263578 PPARGC1BQ86YN6 1023 aaKnown RBP24.49■■□□□ 1.51
FOXRED1-201ENST00000263578 ARHGAP35Q9NRY4 1499 aa24.48■■□□□ 1.51
FOXRED1-201ENST00000263578 AQRO60306 1485 aaKnown RBP eCLIP24.45■■□□□ 1.512e-10■■■■■ 41.8
FOXRED1-201ENST00000263578 GRIN2BQ13224 1484 aa24.43■■□□□ 1.5
FOXRED1-201ENST00000263578 ZNF608Q9ULD9 1512 aaPredicted RBP24.43■■□□□ 1.5
FOXRED1-201ENST00000263578 ADAMTS12P58397 1594 aa24.42■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms