Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC19.66■□□□□ 0.74
HMGB3O15347 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB3O15347 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB3O15347 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB3O15347 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB3O15347 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC19.65■□□□□ 0.74
HMGB3O15347 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
HMGB3O15347 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB3O15347 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB3O15347 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HMGB3O15347 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.64■□□□□ 0.74
HMGB3O15347 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HMGB3O15347 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB3O15347 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB3O15347 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
HMGB3O15347 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB3O15347 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.63■□□□□ 0.73
HMGB3O15347 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB3O15347 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
HMGB3O15347 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB3O15347 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB3O15347 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
HMGB3O15347 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
HMGB3O15347 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB3O15347 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
HMGB3O15347 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB3O15347 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
HMGB3O15347 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB3O15347 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB3O15347 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
HMGB3O15347 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB3O15347 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.62■□□□□ 0.73
HMGB3O15347 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB3O15347 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB3O15347 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC19.61■□□□□ 0.73
HMGB3O15347 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB3O15347 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB3O15347 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB3O15347 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
HMGB3O15347 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HMGB3O15347 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB3O15347 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB3O15347 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB3O15347 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC19.6■□□□□ 0.73
HMGB3O15347 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HMGB3O15347 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
HMGB3O15347 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC19.6■□□□□ 0.73
HMGB3O15347 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.59■□□□□ 0.73
HMGB3O15347 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB3O15347 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB3O15347 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HMGB3O15347 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
HMGB3O15347 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC19.58■□□□□ 0.73
HMGB3O15347 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGB3O15347 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGB3O15347 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HMGB3O15347 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB3O15347 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB3O15347 AC092803.2-201ENST00000564287 1899 ntBASIC19.57■□□□□ 0.72
HMGB3O15347 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB3O15347 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB3O15347 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC19.57■□□□□ 0.72
HMGB3O15347 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB3O15347 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGB3O15347 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGB3O15347 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGB3O15347 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGB3O15347 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HMGB3O15347 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGB3O15347 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGB3O15347 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
HMGB3O15347 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGB3O15347 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGB3O15347 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGB3O15347 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC19.55■□□□□ 0.72
HMGB3O15347 SNAI3-AS1-204ENST00000567997 2048 ntBASIC19.55■□□□□ 0.72
HMGB3O15347 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HMGB3O15347 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.55■□□□□ 0.72
HMGB3O15347 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
HMGB3O15347 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
HMGB3O15347 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
HMGB3O15347 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGB3O15347 DUSP8P4-201ENST00000399538 1761 ntBASIC19.55■□□□□ 0.72
HMGB3O15347 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC19.55■□□□□ 0.72
HMGB3O15347 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
HMGB3O15347 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB3O15347 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB3O15347 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB3O15347 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB3O15347 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB3O15347 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB3O15347 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
HMGB3O15347 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB3O15347 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB3O15347 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGB3O15347 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB3O15347 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB3O15347 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGB3O15347 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
HMGB3O15347 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms