Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
TRAV40A0A0B4J280 DUX4L18-201ENST00000553347 1267 ntBASIC20.07■□□□□ 0.8
TRAV40A0A0B4J280 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
TRAV40A0A0B4J280 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV40A0A0B4J280 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 RAP2CP1-202ENST00000605179 643 ntBASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV40A0A0B4J280 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV40A0A0B4J280 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV40A0A0B4J280 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV40A0A0B4J280 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
TRAV40A0A0B4J280 DUX4L9-201ENST00000449051 1259 ntBASIC20.03■□□□□ 0.8
TRAV40A0A0B4J280 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
TRAV40A0A0B4J280 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV40A0A0B4J280 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV40A0A0B4J280 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.02■□□□□ 0.8
TRAV40A0A0B4J280 LINC01003-201ENST00000564834 1764 ntBASIC20.02■□□□□ 0.8
TRAV40A0A0B4J280 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
TRAV40A0A0B4J280 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
TRAV40A0A0B4J280 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV40A0A0B4J280 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV40A0A0B4J280 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
TRAV40A0A0B4J280 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
TRAV40A0A0B4J280 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV40A0A0B4J280 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV40A0A0B4J280 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV40A0A0B4J280 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV40A0A0B4J280 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC19.99■□□□□ 0.79
TRAV40A0A0B4J280 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.99■□□□□ 0.79
TRAV40A0A0B4J280 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV40A0A0B4J280 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV40A0A0B4J280 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
TRAV40A0A0B4J280 SPCS2P3-201ENST00000500401 656 ntBASIC19.98■□□□□ 0.79
TRAV40A0A0B4J280 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 AL449106.1-201ENST00000608517 1980 ntBASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
TRAV40A0A0B4J280 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV40A0A0B4J280 MIR6765-201ENST00000614092 87 ntBASIC19.96■□□□□ 0.79
TRAV40A0A0B4J280 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV40A0A0B4J280 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC19.96■□□□□ 0.79
TRAV40A0A0B4J280 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 RARRES2P1-201ENST00000474487 481 ntBASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 BHLHE23-202ENST00000612929 1109 ntBASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRAV40A0A0B4J280 AC018755.3-202ENST00000596210 929 ntBASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms