Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
TRAV40A0A0B4J280 DUX4L18-201ENST00000553347 1267 ntBASIC20.07■□□□□ 0.8
TRAV40A0A0B4J280 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
TRAV40A0A0B4J280 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV40A0A0B4J280 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.06■□□□□ 0.8
TRAV40A0A0B4J280 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 RAP2CP1-202ENST00000605179 643 ntBASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV40A0A0B4J280 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV40A0A0B4J280 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV40A0A0B4J280 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV40A0A0B4J280 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV40A0A0B4J280 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
TRAV40A0A0B4J280 DUX4L9-201ENST00000449051 1259 ntBASIC20.03■□□□□ 0.8
TRAV40A0A0B4J280 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
TRAV40A0A0B4J280 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV40A0A0B4J280 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV40A0A0B4J280 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.02■□□□□ 0.8
TRAV40A0A0B4J280 LINC01003-201ENST00000564834 1764 ntBASIC20.02■□□□□ 0.8
TRAV40A0A0B4J280 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
TRAV40A0A0B4J280 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
TRAV40A0A0B4J280 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV40A0A0B4J280 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV40A0A0B4J280 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
TRAV40A0A0B4J280 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
TRAV40A0A0B4J280 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV40A0A0B4J280 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
TRAV40A0A0B4J280 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV40A0A0B4J280 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV40A0A0B4J280 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV40A0A0B4J280 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC19.99■□□□□ 0.79
TRAV40A0A0B4J280 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.99■□□□□ 0.79
TRAV40A0A0B4J280 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV40A0A0B4J280 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV40A0A0B4J280 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
TRAV40A0A0B4J280 SPCS2P3-201ENST00000500401 656 ntBASIC19.98■□□□□ 0.79
TRAV40A0A0B4J280 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 AL449106.1-201ENST00000608517 1980 ntBASIC19.97■□□□□ 0.79
TRAV40A0A0B4J280 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
TRAV40A0A0B4J280 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV40A0A0B4J280 MIR6765-201ENST00000614092 87 ntBASIC19.96■□□□□ 0.79
TRAV40A0A0B4J280 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV40A0A0B4J280 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC19.96■□□□□ 0.79
TRAV40A0A0B4J280 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 RARRES2P1-201ENST00000474487 481 ntBASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 BHLHE23-202ENST00000612929 1109 ntBASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV40A0A0B4J280 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
TRAV40A0A0B4J280 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRAV40A0A0B4J280 AC018755.3-202ENST00000596210 929 ntBASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms