Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV1-1A0A0B4J248 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV1-1A0A0B4J248 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
TRAV1-1A0A0B4J248 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
TRAV1-1A0A0B4J248 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV1-1A0A0B4J248 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV1-1A0A0B4J248 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV1-1A0A0B4J248 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV1-1A0A0B4J248 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV1-1A0A0B4J248 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV1-1A0A0B4J248 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV1-1A0A0B4J248 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV1-1A0A0B4J248 WHAMMP3-201ENST00000611636 1609 ntBASIC19.22■□□□□ 0.67
TRAV1-1A0A0B4J248 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV1-1A0A0B4J248 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
TRAV1-1A0A0B4J248 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV1-1A0A0B4J248 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV1-1A0A0B4J248 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV1-1A0A0B4J248 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC19.22■□□□□ 0.67
TRAV1-1A0A0B4J248 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV1-1A0A0B4J248 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV1-1A0A0B4J248 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV1-1A0A0B4J248 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV1-1A0A0B4J248 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV1-1A0A0B4J248 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV1-1A0A0B4J248 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV1-1A0A0B4J248 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV1-1A0A0B4J248 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV1-1A0A0B4J248 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
TRAV1-1A0A0B4J248 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV1-1A0A0B4J248 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV1-1A0A0B4J248 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.2■□□□□ 0.66
TRAV1-1A0A0B4J248 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
TRAV1-1A0A0B4J248 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
TRAV1-1A0A0B4J248 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.2■□□□□ 0.66
TRAV1-1A0A0B4J248 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV1-1A0A0B4J248 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV1-1A0A0B4J248 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV1-1A0A0B4J248 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.2■□□□□ 0.66
TRAV1-1A0A0B4J248 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
TRAV1-1A0A0B4J248 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC19.19■□□□□ 0.66
TRAV1-1A0A0B4J248 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC19.19■□□□□ 0.66
TRAV1-1A0A0B4J248 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV1-1A0A0B4J248 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.19■□□□□ 0.66
TRAV1-1A0A0B4J248 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC19.19■□□□□ 0.66
TRAV1-1A0A0B4J248 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV1-1A0A0B4J248 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV1-1A0A0B4J248 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV1-1A0A0B4J248 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV1-1A0A0B4J248 KLF16-203ENST00000592313 508 ntTSL 3 BASIC19.18■□□□□ 0.66
TRAV1-1A0A0B4J248 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV1-1A0A0B4J248 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV1-1A0A0B4J248 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
TRAV1-1A0A0B4J248 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV1-1A0A0B4J248 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV1-1A0A0B4J248 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV1-1A0A0B4J248 AC135983.2-203ENST00000454486 1613 ntBASIC19.17■□□□□ 0.66
TRAV1-1A0A0B4J248 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC19.17■□□□□ 0.66
TRAV1-1A0A0B4J248 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV1-1A0A0B4J248 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
TRAV1-1A0A0B4J248 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV1-1A0A0B4J248 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC19.16■□□□□ 0.66
TRAV1-1A0A0B4J248 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.16■□□□□ 0.66
TRAV1-1A0A0B4J248 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC19.16■□□□□ 0.66
TRAV1-1A0A0B4J248 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAV1-1A0A0B4J248 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV1-1A0A0B4J248 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAV1-1A0A0B4J248 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC19.16■□□□□ 0.66
TRAV1-1A0A0B4J248 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAV1-1A0A0B4J248 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC19.16■□□□□ 0.66
TRAV1-1A0A0B4J248 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV1-1A0A0B4J248 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV1-1A0A0B4J248 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV1-1A0A0B4J248 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV1-1A0A0B4J248 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV1-1A0A0B4J248 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV1-1A0A0B4J248 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
TRAV1-1A0A0B4J248 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
TRAV1-1A0A0B4J248 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV1-1A0A0B4J248 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.14■□□□□ 0.65
TRAV1-1A0A0B4J248 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.14■□□□□ 0.65
TRAV1-1A0A0B4J248 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
TRAV1-1A0A0B4J248 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
TRAV1-1A0A0B4J248 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
TRAV1-1A0A0B4J248 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV1-1A0A0B4J248 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC19.13■□□□□ 0.65
TRAV1-1A0A0B4J248 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV1-1A0A0B4J248 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
TRAV1-1A0A0B4J248 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.13■□□□□ 0.65
TRAV1-1A0A0B4J248 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
TRAV1-1A0A0B4J248 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
TRAV1-1A0A0B4J248 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV1-1A0A0B4J248 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV1-1A0A0B4J248 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV1-1A0A0B4J248 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV1-1A0A0B4J248 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV1-1A0A0B4J248 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV1-1A0A0B4J248 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC19.11■□□□□ 0.65
TRAV1-1A0A0B4J248 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC19.11■□□□□ 0.65
TRAV1-1A0A0B4J248 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms