Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 KRT8P33-201ENST00000508125 1423 ntBASIC22.6■■□□□ 1.21
SHANK1Q9Y566 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC22.59■■□□□ 1.21
SHANK1Q9Y566 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SHANK1Q9Y566 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC22.59■■□□□ 1.21
SHANK1Q9Y566 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
SHANK1Q9Y566 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
SHANK1Q9Y566 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SHANK1Q9Y566 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
SHANK1Q9Y566 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC22.58■■□□□ 1.21
SHANK1Q9Y566 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC22.58■■□□□ 1.21
SHANK1Q9Y566 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SHANK1Q9Y566 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
SHANK1Q9Y566 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
SHANK1Q9Y566 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SHANK1Q9Y566 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
SHANK1Q9Y566 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
SHANK1Q9Y566 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SHANK1Q9Y566 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SHANK1Q9Y566 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SHANK1Q9Y566 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
SHANK1Q9Y566 MIR4508-201ENST00000584178 70 ntBASIC22.55■■□□□ 1.2
SHANK1Q9Y566 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC22.55■■□□□ 1.2
SHANK1Q9Y566 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC22.55■■□□□ 1.2
SHANK1Q9Y566 RP9P-202ENST00000450133 1212 ntBASIC22.55■■□□□ 1.2
SHANK1Q9Y566 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SHANK1Q9Y566 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
SHANK1Q9Y566 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
SHANK1Q9Y566 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SHANK1Q9Y566 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
SHANK1Q9Y566 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SHANK1Q9Y566 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SHANK1Q9Y566 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SHANK1Q9Y566 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SHANK1Q9Y566 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC22.54■■□□□ 1.2
SHANK1Q9Y566 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC22.53■■□□□ 1.2
SHANK1Q9Y566 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK1Q9Y566 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
SHANK1Q9Y566 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK1Q9Y566 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK1Q9Y566 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SHANK1Q9Y566 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
SHANK1Q9Y566 AL359258.2-201ENST00000564063 1566 ntBASIC22.53■■□□□ 1.2
SHANK1Q9Y566 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
SHANK1Q9Y566 AC139795.1-202ENST00000500444 432 ntBASIC22.52■■□□□ 1.2
SHANK1Q9Y566 AC103724.3-201ENST00000564481 992 ntBASIC22.52■■□□□ 1.2
SHANK1Q9Y566 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK1Q9Y566 AC074183.2-201ENST00000623112 922 ntBASIC22.52■■□□□ 1.2
SHANK1Q9Y566 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC22.52■■□□□ 1.2
SHANK1Q9Y566 SHF-206ENST00000560471 2499 ntTSL 5 BASIC22.52■■□□□ 1.2
SHANK1Q9Y566 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SHANK1Q9Y566 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC22.52■■□□□ 1.2
SHANK1Q9Y566 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK1Q9Y566 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK1Q9Y566 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK1Q9Y566 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC22.51■■□□□ 1.19
SHANK1Q9Y566 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC22.51■■□□□ 1.19
SHANK1Q9Y566 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC22.51■■□□□ 1.19
SHANK1Q9Y566 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK1Q9Y566 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
SHANK1Q9Y566 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
SHANK1Q9Y566 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC22.5■■□□□ 1.19
SHANK1Q9Y566 THA1P-201ENST00000590384 1145 ntBASIC22.5■■□□□ 1.19
SHANK1Q9Y566 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
SHANK1Q9Y566 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC22.5■■□□□ 1.19
SHANK1Q9Y566 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
SHANK1Q9Y566 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
SHANK1Q9Y566 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC22.5■■□□□ 1.19
SHANK1Q9Y566 AC103834.1-201ENST00000520383 144 ntBASIC22.5■■□□□ 1.19
SHANK1Q9Y566 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
SHANK1Q9Y566 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
SHANK1Q9Y566 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC22.49■■□□□ 1.19
SHANK1Q9Y566 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC22.49■■□□□ 1.19
SHANK1Q9Y566 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC22.48■■□□□ 1.19
SHANK1Q9Y566 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
SHANK1Q9Y566 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC22.48■■□□□ 1.19
SHANK1Q9Y566 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SHANK1Q9Y566 MIR6765-201ENST00000614092 87 ntBASIC22.48■■□□□ 1.19
SHANK1Q9Y566 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC22.48■■□□□ 1.19
SHANK1Q9Y566 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
SHANK1Q9Y566 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
SHANK1Q9Y566 BHLHE23-202ENST00000612929 1109 ntBASIC22.48■■□□□ 1.19
SHANK1Q9Y566 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC22.47■■□□□ 1.19
SHANK1Q9Y566 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC22.47■■□□□ 1.19
SHANK1Q9Y566 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
SHANK1Q9Y566 HYI-210ENST00000486909 905 ntTSL 5 BASIC22.47■■□□□ 1.19
SHANK1Q9Y566 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC22.47■■□□□ 1.19
SHANK1Q9Y566 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC22.47■■□□□ 1.19
SHANK1Q9Y566 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
SHANK1Q9Y566 PFN2-211ENST00000489155 636 ntTSL 4 BASIC22.46■■□□□ 1.19
SHANK1Q9Y566 AC100797.4-201ENST00000631653 1827 ntBASIC22.46■■□□□ 1.19
SHANK1Q9Y566 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC22.46■■□□□ 1.19
SHANK1Q9Y566 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
SHANK1Q9Y566 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
SHANK1Q9Y566 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
SHANK1Q9Y566 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC22.45■■□□□ 1.18
SHANK1Q9Y566 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
SHANK1Q9Y566 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
SHANK1Q9Y566 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
SHANK1Q9Y566 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.44■■□□□ 1.18
SHANK1Q9Y566 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms