Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
CHMP1AQ9HD42 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CHMP1AQ9HD42 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP1AQ9HD42 PKM-203ENST00000389093 2279 ntTSL 5 BASIC21.19■□□□□ 0.98
CHMP1AQ9HD42 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP1AQ9HD42 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CHMP1AQ9HD42 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.19■□□□□ 0.98
CHMP1AQ9HD42 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP1AQ9HD42 WHAMMP2-203ENST00000563942 1603 ntBASIC21.18■□□□□ 0.98
CHMP1AQ9HD42 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
CHMP1AQ9HD42 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.18■□□□□ 0.98
CHMP1AQ9HD42 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP1AQ9HD42 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP1AQ9HD42 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CHMP1AQ9HD42 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CHMP1AQ9HD42 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP1AQ9HD42 MIR6090-201ENST00000622481 60 ntBASIC21.17■□□□□ 0.98
CHMP1AQ9HD42 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CHMP1AQ9HD42 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.16■□□□□ 0.98
CHMP1AQ9HD42 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP1AQ9HD42 AC018358.1-201ENST00000631079 1402 ntBASIC21.15■□□□□ 0.98
CHMP1AQ9HD42 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP1AQ9HD42 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP1AQ9HD42 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CHMP1AQ9HD42 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.15■□□□□ 0.98
CHMP1AQ9HD42 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CHMP1AQ9HD42 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.14■□□□□ 0.97
CHMP1AQ9HD42 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CHMP1AQ9HD42 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP1AQ9HD42 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP1AQ9HD42 DUX4L28-201ENST00000623687 678 ntBASIC21.13■□□□□ 0.97
CHMP1AQ9HD42 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP1AQ9HD42 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP1AQ9HD42 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.13■□□□□ 0.97
CHMP1AQ9HD42 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC21.13■□□□□ 0.97
CHMP1AQ9HD42 LINC00273-201ENST00000539813 1452 ntBASIC21.13■□□□□ 0.97
CHMP1AQ9HD42 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP1AQ9HD42 MIR3665-201ENST00000578708 105 ntBASIC21.12■□□□□ 0.97
CHMP1AQ9HD42 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP1AQ9HD42 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP1AQ9HD42 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP1AQ9HD42 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP1AQ9HD42 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CHMP1AQ9HD42 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP1AQ9HD42 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CHMP1AQ9HD42 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP1AQ9HD42 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP1AQ9HD42 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP1AQ9HD42 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP1AQ9HD42 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC21.1■□□□□ 0.97
CHMP1AQ9HD42 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.1■□□□□ 0.97
CHMP1AQ9HD42 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP1AQ9HD42 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.1■□□□□ 0.97
CHMP1AQ9HD42 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CHMP1AQ9HD42 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CHMP1AQ9HD42 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP1AQ9HD42 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP1AQ9HD42 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC21.09■□□□□ 0.97
CHMP1AQ9HD42 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP1AQ9HD42 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CHMP1AQ9HD42 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
CHMP1AQ9HD42 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CHMP1AQ9HD42 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CHMP1AQ9HD42 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP1AQ9HD42 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.07■□□□□ 0.96
CHMP1AQ9HD42 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP1AQ9HD42 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.07■□□□□ 0.96
CHMP1AQ9HD42 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
CHMP1AQ9HD42 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
CHMP1AQ9HD42 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP1AQ9HD42 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CHMP1AQ9HD42 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.07■□□□□ 0.96
CHMP1AQ9HD42 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
CHMP1AQ9HD42 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP1AQ9HD42 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CHMP1AQ9HD42 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CHMP1AQ9HD42 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP1AQ9HD42 CIB2-204ENST00000557846 934 ntTSL 3 BASIC21.06■□□□□ 0.96
CHMP1AQ9HD42 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHMP1AQ9HD42 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.06■□□□□ 0.96
CHMP1AQ9HD42 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.06■□□□□ 0.96
CHMP1AQ9HD42 AC091060.1-201ENST00000623524 1766 ntBASIC21.05■□□□□ 0.96
CHMP1AQ9HD42 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP1AQ9HD42 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CHMP1AQ9HD42 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP1AQ9HD42 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CHMP1AQ9HD42 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP1AQ9HD42 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.04■□□□□ 0.96
CHMP1AQ9HD42 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
CHMP1AQ9HD42 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP1AQ9HD42 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.02■□□□□ 0.96
CHMP1AQ9HD42 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP1AQ9HD42 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP1AQ9HD42 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP1AQ9HD42 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CHMP1AQ9HD42 AP006261.1-201ENST00000584783 668 ntBASIC21.02■□□□□ 0.96
CHMP1AQ9HD42 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
CHMP1AQ9HD42 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.01■□□□□ 0.95
CHMP1AQ9HD42 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.01■□□□□ 0.95
CHMP1AQ9HD42 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms