Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.28■■□□□ 1
PTX4Q96A99 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
PTX4Q96A99 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
PTX4Q96A99 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.28■■□□□ 1
PTX4Q96A99 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC21.28■■□□□ 1
PTX4Q96A99 AP004609.3-201ENST00000610705 1884 ntBASIC21.28■■□□□ 1
PTX4Q96A99 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
PTX4Q96A99 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTX4Q96A99 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTX4Q96A99 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.27■■□□□ 1
PTX4Q96A99 AC108673.1-201ENST00000510422 1159 ntBASIC21.27■■□□□ 1
PTX4Q96A99 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PTX4Q96A99 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.26■□□□□ 0.99
PTX4Q96A99 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PTX4Q96A99 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
PTX4Q96A99 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC21.26■□□□□ 0.99
PTX4Q96A99 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.26■□□□□ 0.99
PTX4Q96A99 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.26■□□□□ 0.99
PTX4Q96A99 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PTX4Q96A99 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PTX4Q96A99 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.25■□□□□ 0.99
PTX4Q96A99 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PTX4Q96A99 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PTX4Q96A99 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTX4Q96A99 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
PTX4Q96A99 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PTX4Q96A99 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTX4Q96A99 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTX4Q96A99 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PTX4Q96A99 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
PTX4Q96A99 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTX4Q96A99 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.23■□□□□ 0.99
PTX4Q96A99 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PTX4Q96A99 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PTX4Q96A99 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
PTX4Q96A99 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PTX4Q96A99 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.21■□□□□ 0.99
PTX4Q96A99 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTX4Q96A99 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC21.21■□□□□ 0.99
PTX4Q96A99 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTX4Q96A99 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTX4Q96A99 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTX4Q96A99 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.21■□□□□ 0.99
PTX4Q96A99 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PTX4Q96A99 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PTX4Q96A99 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PTX4Q96A99 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTX4Q96A99 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTX4Q96A99 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC21.2■□□□□ 0.98
PTX4Q96A99 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PTX4Q96A99 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTX4Q96A99 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PTX4Q96A99 AC142472.1-201ENST00000612013 1741 ntBASIC21.19■□□□□ 0.98
PTX4Q96A99 AC005559.1-201ENST00000589661 871 ntBASIC21.19■□□□□ 0.98
PTX4Q96A99 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTX4Q96A99 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.19■□□□□ 0.98
PTX4Q96A99 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTX4Q96A99 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTX4Q96A99 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTX4Q96A99 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.18■□□□□ 0.98
PTX4Q96A99 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTX4Q96A99 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PTX4Q96A99 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.17■□□□□ 0.98
PTX4Q96A99 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTX4Q96A99 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.17■□□□□ 0.98
PTX4Q96A99 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
PTX4Q96A99 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC21.16■□□□□ 0.98
PTX4Q96A99 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PTX4Q96A99 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PTX4Q96A99 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
PTX4Q96A99 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.15■□□□□ 0.98
PTX4Q96A99 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTX4Q96A99 SUZ12P1-203ENST00000578195 985 ntBASIC21.15■□□□□ 0.98
PTX4Q96A99 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.15■□□□□ 0.98
PTX4Q96A99 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
PTX4Q96A99 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
PTX4Q96A99 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PTX4Q96A99 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
PTX4Q96A99 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.14■□□□□ 0.98
PTX4Q96A99 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
PTX4Q96A99 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
PTX4Q96A99 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
PTX4Q96A99 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTX4Q96A99 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.13■□□□□ 0.97
PTX4Q96A99 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.13■□□□□ 0.97
PTX4Q96A99 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTX4Q96A99 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
PTX4Q96A99 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PTX4Q96A99 MIR6090-201ENST00000622481 60 ntBASIC21.13■□□□□ 0.97
PTX4Q96A99 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.13■□□□□ 0.97
PTX4Q96A99 AC093323.1-202ENST00000635031 2045 ntBASIC21.12■□□□□ 0.97
PTX4Q96A99 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTX4Q96A99 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
PTX4Q96A99 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PTX4Q96A99 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
PTX4Q96A99 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTX4Q96A99 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.11■□□□□ 0.97
PTX4Q96A99 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.11■□□□□ 0.97
PTX4Q96A99 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.11■□□□□ 0.97
PTX4Q96A99 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 8.7 ms